View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14785_low_1 (Length: 713)
Name: NF14785_low_1
Description: NF14785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14785_low_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 164 - 713
Target Start/End: Complemental strand, 55366105 - 55365560
Alignment:
| Q |
164 |
gtatatgttttttacatttcagattgtcaaaggaaaagctgaggagaaaggagatgatggtgtggtggctagaaagttcatgaatgctccagcagcagaa |
263 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
55366105 |
gtatatgttttttacatttcagattgtcaatggaaaagctgtggagaaaggagatg---gtgtggtggctagaaagttcatgaatggtccagcagcagaa |
55366009 |
T |
|
| Q |
264 |
gtagatgatcagcaagagcctgaaccatgcacacctcagaacaatcataaagagcctgatccggacgcatcagaactagtacaacttttggaccgaagtc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55366008 |
gtagatgatcagcaagagcctgaaccatgcacacctcagaacaatcataaagagcctgatccggacgcatcagaactagtacaacttttggaccgaagtc |
55365909 |
T |
|
| Q |
364 |
agcttcccagattaaacccctccaacgctgctgatcaagccaatgcagaagccactatgagaaaagcacgagtctcagtccgtgctagatcagaagccca |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55365908 |
agcttcccagattaaacccctccaacgctgctgatcaagccaatgcagaagccactatgagaaaagcacgagtctcagtccgtgctagatcagaagccca |
55365809 |
T |
|
| Q |
464 |
catggtatagtatattagtgtgcatccataatagaaatccaattcaatttatatcattgattacttatagctgaattgattaactaattgatcacaattg |
563 |
Q |
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||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55365808 |
catggtatattatattagtgtgcatcgataatagaaatctaattcaa-ttatatcattgattacttatagctgaattgattaactaattgatcacaattg |
55365710 |
T |
|
| Q |
564 |
cagatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgcctattatagatgcacaatggctcttggtt |
663 |
Q |
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| T |
55365709 |
cagatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgcctattatagatgcacaatggctcttggtt |
55365610 |
T |
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| Q |
664 |
gccccgttcgcaaacaagtgagtcttattattctgatgaatcaatgtgta |
713 |
Q |
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| T |
55365609 |
gccccgttcgcaaacaagtgagtcttattattctgatgaatcaatgtgta |
55365560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 55366252 - 55366162
Alignment:
| Q |
9 |
agtgagatgaacagtagctacacaaacttgcataagcgttttatatccttaatgcaacagcaacagaaccaaaccacagaacatgatcatg |
99 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55366252 |
agtgacatgaacagtagctacacaaacttgcataaccgttttatatccttaatgcaacagcaacagaaccaaaccacagaacatgatcatg |
55366162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 637
Target Start/End: Original strand, 37939209 - 37939281
Alignment:
| Q |
565 |
agatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgccta |
637 |
Q |
| |
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|||| |||||||| ||||||||| ||||||| ||||||||||| || |||||||| || ||||| |||||||| |
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| T |
37939209 |
agatgaatgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgccta |
37939281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 166 - 663
Target Start/End: Complemental strand, 14010175 - 14009682
Alignment:
| Q |
166 |
atatgttttttacatttcagattgtcaaaggaaaagctgaggagaaaggagatgatggtgtggtggctagaaagttcatgaatgctccagcagcagaagt |
265 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
14010175 |
atatgttttttacatttcagattgtcaaaggaaaagctgaggagaaaggagatg---gtgtggtggctagaaagttcatgaatggtccagcagcaaaagt |
14010079 |
T |
|
| Q |
266 |
agatgatcagcaagagcctgaaccatgcacacctcagaacaatcataaagagcctgatccggacgcatcagaactagtacaacttttggaccgaagtcag |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14010078 |
agatgatcagcaagagcctgaaccatgcacacctcagaacaatcataaagagcctgatccggacgcatcagaactagtacaacttttggaccgaagtcag |
14009979 |
T |
|
| Q |
366 |
cttcccagattaaacccctccaacgctgctgatcaagccaatgcagaagccactatgagaaaagcacgagtctcagtccgtgctagatcagaagcccaca |
465 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14009978 |
cttcccagattaaacccctccaacgctgctgatcaagccaatgcagaagccactatgagaaaagcacgagtctcagtccgtgctagatcagaagcccaca |
14009879 |
T |
|
| Q |
466 |
tggtatagtatattagtgtgcatccataatagaaatccaattcaatttatatcattgattacttatagctgaattgattaactaattgatcacaattgca |
565 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14009878 |
tggtatagtatattagtgtgcatcgataatagaaatctaattcaa-ttatatcattgattacttatagctgaattgattaactaattgatcacaattgca |
14009780 |
T |
|
| Q |
566 |
gatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgcctattatagatgcacaatggctcttggtt |
663 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14009779 |
gatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgcgtattatagatgcacaatggctcttggtt |
14009682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 166 - 663
Target Start/End: Original strand, 19614040 - 19614533
Alignment:
| Q |
166 |
atatgttttttacatttcagattgtcaaaggaaaagctgaggagaaaggagatgatggtgtggtggctagaaagttcatgaatgctccagcagcagaagt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
19614040 |
atatgttttttacatttcagattgtcaaaggaaaagctgaggagaaaggagatg---gtgtggtggctagaaagttcatgaatggtccagcagcaaaagt |
19614136 |
T |
|
| Q |
266 |
agatgatcagcaagagcctgaaccatgcacacctcagaacaatcataaagagcctgatccggacgcatcagaactagtacaacttttggaccgaagtcag |
365 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19614137 |
agatgatcagcaagagcctgaaccatgcacacctcagaacaatcataaagagcctgatccggacgcatcagaactagtacaacttttggaccgaagtcag |
19614236 |
T |
|
| Q |
366 |
cttcccagattaaacccctccaacgctgctgatcaagccaatgcagaagccactatgagaaaagcacgagtctcagtccgtgctagatcagaagcccaca |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19614237 |
cttcccagattaaacccctccaacgctgctgatcaagccaatgcagaagccactatgagaaaagcacgagtctcagtccgtgctagatcagaagcccaca |
19614336 |
T |
|
| Q |
466 |
tggtatagtatattagtgtgcatccataatagaaatccaattcaatttatatcattgattacttatagctgaattgattaactaattgatcacaattgca |
565 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19614337 |
tggtatagtatattagtgtgcatcgataatagaaatctaattcaa-ttatatcattgattacttatagctgaattgattaactaattgatcacaattgca |
19614435 |
T |
|
| Q |
566 |
gatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgcctattatagatgcacaatggctcttggtt |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19614436 |
gatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgcgtattatagatgcacaatggctcttggtt |
19614533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 559 - 686
Target Start/End: Complemental strand, 8497294 - 8497167
Alignment:
| Q |
559 |
aattgcagatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgcctattatagatgcacaatggctct |
658 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||| || || ||||||||||| ||||| | |
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|
| T |
8497294 |
aattgcagataagtgatggatgccaatggagaaaatatggacaaaaaatggctaaaggaaatccatgtcctcgagcatactatagatgcactatggcagt |
8497195 |
T |
|
| Q |
659 |
tggttgccccgttcgcaaacaagtgagt |
686 |
Q |
| |
|
|||||| || |||||||||||||||||| |
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| T |
8497194 |
tggttgtccagttcgcaaacaagtgagt |
8497167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 564 - 656
Target Start/End: Original strand, 37053069 - 37053161
Alignment:
| Q |
564 |
cagatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgcctattatagatgcacaatggct |
656 |
Q |
| |
|
|||||||||||||| || |||||| |||| |||||||| |||||||| ||||||||||| |||||||| || |||||| ||||||| |||||| |
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| T |
37053069 |
cagatcaatgatgggtgtcaatggagaaagtacggacagaaaatggcgaaaggaaacccgtgtcctcgagcttattatcgatgcaccatggct |
37053161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 8497446 - 8497382
Alignment:
| Q |
396 |
gatcaagccaatgcagaagccactatgagaaaagcacgagtctcagtccgtgctagatcagaagc |
460 |
Q |
| |
|
|||||||| ||| ||||||| || ||||||||||| || ||||| || ||||||||||||||||| |
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|
| T |
8497446 |
gatcaagcaaatacagaagctacaatgagaaaagctcgtgtctccgttcgtgctagatcagaagc |
8497382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 616 - 663
Target Start/End: Complemental strand, 9639682 - 9639635
Alignment:
| Q |
616 |
gaaacccttgtcctcgtgcctattatagatgcacaatggctcttggtt |
663 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
9639682 |
gaaacccttctcctcgtgcgtattatagatgcacaatggctcttggtt |
9639635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 679
Target Start/End: Complemental strand, 45374464 - 45374358
Alignment:
| Q |
573 |
gatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgcctattatagatgcacaatggctcttggttgccccgttc |
672 |
Q |
| |
|
|||||||| || ||| | ||||| |||||||||||||| || || |||||||||||||||||||| ||| | ||||| |||||| | || || || |||| |
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| T |
45374464 |
gatggatgtcagtggaggaaatatggacaaaaaatggccaagggtaacccttgtcctcgtgcctactatcgttgcactatggctgtaggatgtccagttc |
45374365 |
T |
|
| Q |
673 |
gcaaaca |
679 |
Q |
| |
|
||||||| |
|
|
| T |
45374364 |
gcaaaca |
45374358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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