View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14785_low_4 (Length: 416)

Name: NF14785_low_4
Description: NF14785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14785_low_4
NF14785_low_4
[»] chr2 (8 HSPs)
chr2 (17-405)||(35849334-35849722)
chr2 (182-389)||(35840511-35840729)
chr2 (225-269)||(38766713-38766757)
chr2 (213-269)||(41730533-41730589)
chr2 (210-269)||(1163342-1163401)
chr2 (210-269)||(1169409-1169468)
chr2 (226-269)||(24098479-24098522)
chr2 (224-269)||(29378606-29378651)
[»] chr1 (6 HSPs)
chr1 (17-93)||(44384519-44384594)
chr1 (226-269)||(7210567-7210610)
chr1 (221-269)||(30048539-30048587)
chr1 (212-264)||(3240562-3240614)
chr1 (221-269)||(15707554-15707602)
chr1 (221-249)||(46937653-46937681)
[»] scaffold0137 (1 HSPs)
scaffold0137 (226-269)||(36031-36074)
[»] chr5 (7 HSPs)
chr5 (221-272)||(9634866-9634917)
chr5 (226-275)||(38516610-38516659)
chr5 (224-269)||(41991282-41991327)
chr5 (221-269)||(4272857-4272905)
chr5 (224-264)||(6586613-6586653)
chr5 (215-254)||(7430107-7430147)
chr5 (225-273)||(10440319-10440367)
[»] chr4 (8 HSPs)
chr4 (224-271)||(48244385-48244432)
chr4 (221-258)||(42647470-42647507)
chr4 (221-272)||(2316932-2316983)
chr4 (221-251)||(4447986-4448016)
chr4 (226-272)||(8284446-8284492)
chr4 (224-269)||(30617190-30617235)
chr4 (221-269)||(26275458-26275506)
chr4 (225-273)||(51255306-51255353)
[»] chr8 (6 HSPs)
chr8 (224-272)||(26480716-26480764)
chr8 (221-269)||(3644453-3644501)
chr8 (235-279)||(18357263-18357307)
chr8 (210-269)||(36145348-36145407)
chr8 (215-251)||(12742457-12742493)
chr8 (225-269)||(19914106-19914150)
[»] chr7 (14 HSPs)
chr7 (221-269)||(23117280-23117328)
chr7 (226-269)||(27091725-27091768)
chr7 (226-269)||(27186533-27186576)
chr7 (224-267)||(28071499-28071542)
chr7 (225-268)||(34925253-34925296)
chr7 (212-261)||(39281403-39281452)
chr7 (225-277)||(27720473-27720525)
chr7 (221-269)||(48517366-48517414)
chr7 (222-269)||(29234271-29234318)
chr7 (221-272)||(30900030-30900081)
chr7 (221-267)||(28989927-28989973)
chr7 (221-267)||(32736024-32736070)
chr7 (221-269)||(28726990-28727038)
chr7 (221-269)||(31907699-31907747)
[»] chr3 (5 HSPs)
chr3 (224-272)||(9279799-9279847)
chr3 (226-269)||(3924121-3924164)
chr3 (215-269)||(2082086-2082140)
chr3 (228-269)||(50376176-50376217)
chr3 (222-270)||(14277958-14278006)
[»] scaffold0153 (3 HSPs)
scaffold0153 (215-269)||(16127-16181)
scaffold0153 (215-269)||(31384-31438)
scaffold0153 (224-269)||(31712-31757)
[»] chr6 (5 HSPs)
chr6 (222-275)||(10393969-10394022)
chr6 (224-269)||(31582030-31582075)
chr6 (224-269)||(31738971-31739016)
chr6 (224-272)||(25207418-25207466)
chr6 (224-268)||(35069726-35069770)


Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 35849722 - 35849334
Alignment:
Q  17 tgacattgctttcttgtttatgcatatataatgtttgaaatttgtcagagggatgaaacaaagtctcttcattggtggtgctaaaattaaagttgtacat 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35849722 tgacattgctttcttgtttatgcatatataatgattgaaatttgtcagagggatgaaacaaagtctcttcattggtggtgctaaaattaaagttgtacat 35849623  T
Q  117 aaaagttaaatgttttattaatactactaataattactagtaagtgaattgaattgaaacatttgcatacaatcagttgtcaaacagccgctctgctata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35849622 aaaagttaaatgttttattaatactactaataattactagtaagtgaattgaattgaaacatttgcatacaatcagttgtcaaacagccgctctgctata 35849523  T
Q  217 gtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaacattgcatgaaatcccttgttactgtaggttctgtagcttatgctttca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35849522 gtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaacattgcatgaaatcccttgttactgtaggttctgtagcttatgctttca 35849423  T
Q  317 ccgaaaacagagattcggaagaaagctgtgcaaaagtagttatggttagttgtcacttttagtggaaaacaacgactacaacacctatg 405  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35849422 ccgaaaacagagattcggaagaaagttgtgcaaaagtagttatggttagttgtcacttttagtggaaaacaacgactacaacacctatg 35849334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 182 - 389
Target Start/End: Complemental strand, 35840729 - 35840511
Alignment:
Q  182 catacaatcagttgtcaaacagccgctctgctatagtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaacattgcatgaaatc 281  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||| |||||    
T  35840729 catacaatcagttgtcaaacagccgctctgctatagcgcagcggaatttgaacaaactgctatcttccgcaatctgtaattgacaacattgcataaaatc 35840630  T
Q  282 ccttgttactgtaggttctgtagcttatgctttcaccgaaaaca-----------gagattcggaagaaagctgtgcaaaagtagttatggttagttgtc 370  Q
    | | |||||||||| ||||||||||||||||||||||||||| |           ||||||| |||| ||| | |||||| ||||||||||  |||||||    
T  35840629 cttagttactgtagattctgtagcttatgctttcaccgaaaatagcatgaaagatgagattctgaaggaagttctgcaaacgtagttatggacagttgtc 35840530  T
Q  371 acttttagtggaaaacaac 389  Q
    |||||||||||||||||||    
T  35840529 acttttagtggaaaacaac 35840511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 38766757 - 38766713
Alignment:
Q  225 gaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  38766757 gaatttgaacaaaccgctattttacgcgatctgcaattgacaaca 38766713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 41730533 - 41730589
Alignment:
Q  213 tatagtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||| | |||||||||||||| |||||||||||||| ||| ||| |||||||||    
T  41730533 tatagtgtaccggaatttgaacaacccgctattttccacgatccgcagttgacaaca 41730589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 1163342 - 1163401
Alignment:
Q  210 tgctatagtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||| ||||| |||| ||||||||||| || ||||||||||| |||| ||||||||||||    
T  1163342 tgctgtagtgtagcgaaatttgaacaatccactattttccaccatctacaattgacaaca 1163401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 1169409 - 1169468
Alignment:
Q  210 tgctatagtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||| ||||| || ||||||||||||| || ||||||||||| |||| ||||||||||||    
T  1169409 tgctgtagtgtagtggaatttgaacaatccactattttccaccatctacaattgacaaca 1169468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 24098479 - 24098522
Alignment:
Q  226 aatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||| |||||||||||||||||  ||||||||||    
T  24098479 aatttgaacaaacccctattttccacaatctgtgattgacaaca 24098522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 29378606 - 29378651
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||||||||||||||||||| |||| ||| || ||||||||||    
T  29378606 ggaatttgaacaaaccgctatttcccacgatccgcgattgacaaca 29378651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 44384594 - 44384519
Alignment:
Q  17 tgacattgctttcttgtttatgcatatataatgtttgaaatttgtcagagggatgaaacaaagtctcttcattggtg 93  Q
    |||||||||||||||||||||| ||  || ||| |||||||||||| |||||||||||| |||||||||||||||||    
T  44384594 tgacattgctttcttgtttatgtatgaattatgattgaaatttgtctgagggatgaaac-aagtctcttcattggtg 44384519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 7210610 - 7210567
Alignment:
Q  226 aatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||| |||||| |||||||||||||||||||||||||||||    
T  7210610 aatttgagcaaaccactattttccacaatctgcaattgacaaca 7210567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 30048587 - 30048539
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||||||| | ||||||||||||| |||||| |||||||    
T  30048587 agcggaatttgaacaaactgttattttccacaatttgcaatcgacaaca 30048539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 3240562 - 3240614
Alignment:
Q  212 ctatagtggagcggaatttgaacaaaccgctattttccacaatctgcaattga 264  Q
    |||| ||| |||||||||||| |||||  ||||||||||| ||||||||||||    
T  3240562 ctattgtgtagcggaatttgagcaaacaactattttccacgatctgcaattga 3240614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 15707602 - 15707554
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||||||| ||||||||  ||||||||  ||||||||||    
T  15707602 agcggaatttgaacaaactgctattttttacaatctgtgattgacaaca 15707554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 46937653 - 46937681
Alignment:
Q  221 agcggaatttgaacaaaccgctattttcc 249  Q
    |||||||||||||||||||||||||||||    
T  46937653 agcggaatttgaacaaaccgctattttcc 46937681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 36074 - 36031
Alignment:
Q  226 aatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  36074 aattggaacaaaccgctattttccacaatctgcaattgacaaca 36031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 9634917 - 9634866
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaacattg 272  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  9634917 agcggaatttgaacaaaccgctattttctgtaatctgcaattgacaacattg 9634866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 38516610 - 38516659
Alignment:
Q  226 aatttgaacaaaccgctattttccacaatctgcaattgacaacattgcat 275  Q
    |||||||||||||||||||||||||| ||| ||| ||||||||| |||||    
T  38516610 aatttgaacaaaccgctattttccactatccgcagttgacaacactgcat 38516659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 41991282 - 41991327
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||||||||||||||  | ||||| |||||||||||    
T  41991282 ggaatttgaacaaaccgctattttctgcgatctgtaattgacaaca 41991327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 4272857 - 4272905
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||||||| | |||||||| || |||||||| |||||||    
T  4272857 agcggaatttgaacaaactgttattttccgcagtctgcaatggacaaca 4272905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 6586613 - 6586653
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattga 264  Q
    |||||||||||||||||||||||||| |||||  |||||||    
T  6586613 ggaatttgaacaaaccgctattttccgcaatccacaattga 6586653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 7430107 - 7430147
Alignment:
Q  215 tagtggagcggaatttgaacaaaccgctatt-ttccacaat 254  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  7430107 tagtggagcggaatttggacaaaccgctattgttccacaat 7430147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 10440319 - 10440367
Alignment:
Q  225 gaatttgaacaaaccgctattttccacaatctgcaattgacaacattgc 273  Q
    |||||||||||| || ||||||||| | ||| |||||||||||||||||    
T  10440319 gaatttgaacaatccactattttccgcgatccgcaattgacaacattgc 10440367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 48244432 - 48244385
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaacatt 271  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  48244432 ggaatttgaacaaaccgctaatttccactatctgcaattgacaacatt 48244385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 42647470 - 42647507
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgc 258  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  42647470 agcggaatttgaacaaaccgctattttccaccatctgc 42647507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 2316983 - 2316932
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaacattg 272  Q
    |||||||||||||||||| ||||||||   | ||||||||||||||||||||    
T  2316983 agcggaatttgaacaaactgctattttgtgcgatctgcaattgacaacattg 2316932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 251
Target Start/End: Original strand, 4447986 - 4448016
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccac 251  Q
    |||||||||||||||||||||||||||||||    
T  4447986 agcggaatttgaacaaaccgctattttccac 4448016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 8284446 - 8284492
Alignment:
Q  226 aatttgaacaaaccgctattttccacaatctgcaattgacaacattg 272  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||||    
T  8284446 aatttgaacaaaccacttttttcaacaatctgcaaatgacaacattg 8284492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 30617235 - 30617190
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||||||||||||||  |||||  ||||||||||||    
T  30617235 ggaatttgaacaaaccgctattttctgcaatccccaattgacaaca 30617190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 26275506 - 26275458
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||||||||||||| ||||||||||  | ||||| |||||||||||    
T  26275506 agcggaatttgaacaaatcgctattttctgcgatctgtaattgacaaca 26275458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 51255353 - 51255306
Alignment:
Q  225 gaatttgaacaaaccgctattttccacaatctgcaattgacaacattgc 273  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||||||    
T  51255353 gaatttgtacaaac-gctattttccacaatctgcatctgacaacattgc 51255306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 26480716 - 26480764
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaacattg 272  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  26480716 ggaatttgaacaacccgttattttccacaatctgtaattgacaacattg 26480764  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 3644501 - 3644453
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||||    
T  3644501 agcggaatttgaacaaaccgctactttttgcaatctgcaattgacaaca 3644453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 18357263 - 18357307
Alignment:
Q  235 aaaccgctattttccacaatctgcaattgacaacattgcatgaaa 279  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||    
T  18357263 aaaccactattttccgcaatctgcaattgacaacattgcaagaaa 18357307  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 36145348 - 36145407
Alignment:
Q  210 tgctatagtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||||||| ||||| |||||| ||||| ||||||||   ||||||||||||||||||    
T  36145348 tgctatagtggtgcggagtttgaaaaaaccactattttctgtaatctgcaattgacaaca 36145407  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 12742493 - 12742457
Alignment:
Q  215 tagtggagcggaatttgaacaaaccgctattttccac 251  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  12742493 tagtgtagcggaatttgaacaaaccactattttccac 12742457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 19914106 - 19914150
Alignment:
Q  225 gaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||| ||||||||| ||||||  |||||||||||||||||||||    
T  19914106 gaattagaacaaaccactatttatcacaatctgcaattgacaaca 19914150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 23117328 - 23117280
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||||||    
T  23117328 agcggaatttgaacaaaccactattttccgcaatccgcaattgacaaca 23117280  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 27091725 - 27091768
Alignment:
Q  226 aatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  27091725 aatttgatcaaaccgctattttccacaatctgtaattgacaaca 27091768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 27186576 - 27186533
Alignment:
Q  226 aatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  27186576 aatttgatcaaaccgctattttccacaatctgtaattgacaaca 27186533  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 28071499 - 28071542
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaa 267  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  28071499 ggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 28071542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 34925296 - 34925253
Alignment:
Q  225 gaatttgaacaaaccgctattttccacaatctgcaattgacaac 268  Q
    |||||||||||||| |||||||||||| ||||||||||||||||    
T  34925296 gaatttgaacaaactgctattttccacgatctgcaattgacaac 34925253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 39281452 - 39281403
Alignment:
Q  212 ctatagtggagcggaatttgaacaaaccgctattttccacaatctgcaat 261  Q
    |||||||| |||||||||||||||| |||||||||||||| ||| |||||    
T  39281452 ctatagtgtagcggaatttgaacaagccgctattttccacgatccgcaat 39281403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 27720473 - 27720525
Alignment:
Q  225 gaatttgaacaaaccgctattttccacaatctgcaattgacaacattgcatga 277  Q
    ||||||||||||||| ||||||||||  ||| ||||||||||||| |||||||    
T  27720473 gaatttgaacaaaccactattttccatgatccgcaattgacaacactgcatga 27720525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 48517414 - 48517366
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||| |||||||||||||||||||||||||  || ||||||||||||||    
T  48517414 agcgaaatttgaacaaaccgctattttccatcatttgcaattgacaaca 48517366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 29234271 - 29234318
Alignment:
Q  222 gcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  29234271 gcggaatttgaacaaaccgctaatttccgcaatccacaattgacaaca 29234318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 30900081 - 30900030
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaacattg 272  Q
    |||||||||||| |||||| ||||||||  |||||||||||||||| |||||    
T  30900081 agcggaatttgagcaaaccactattttctgcaatctgcaattgacatcattg 30900030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 28989973 - 28989927
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaa 267  Q
    ||||||||||||||||| | ||||||||||  |||||||||||||||    
T  28989973 agcggaatttgaacaaatcactattttccatgatctgcaattgacaa 28989927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 32736070 - 32736024
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaa 267  Q
    |||||||||||||||||||||||||| ||   |||||||||||||||    
T  32736070 agcggaatttgaacaaaccgctatttcccgtgatctgcaattgacaa 32736024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 28726990 - 28727038
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||||||||||||||||   |||||| |||||| |||||    
T  28726990 agcggaatttgaacaaaccgctattttttgcaatctacaattgtcaaca 28727038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 31907699 - 31907747
Alignment:
Q  221 agcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||||| | |||||||| |||| |||| |||||||||||    
T  31907699 agcggaatttgaacaagctgctatttttcacagtctgtaattgacaaca 31907747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 9279847 - 9279799
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaacattg 272  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  9279847 ggaatttgagcgaaccgctgttttccacaatctgcaattgacaacattg 9279799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 3924164 - 3924121
Alignment:
Q  226 aatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  3924164 aattggaacaaaccactattttccacaatctgcaattgacaaca 3924121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 2082086 - 2082140
Alignment:
Q  215 tagtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||| ||| ||||||||||||||||||||||||||| | || ||||||||||||    
T  2082086 tagtgtagcagaatttgaacaaaccgctattttccacgagctacaattgacaaca 2082140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 50376217 - 50376176
Alignment:
Q  228 tttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  50376217 tttgaacaaaccgctattttctacgatctgcaattgacaaca 50376176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 14278006 - 14277958
Alignment:
Q  222 gcggaatttgaacaaaccgctattttccacaatctgcaattgacaacat 270  Q
    |||||||||||||||||||| ||||||   ||| |||||||||||||||    
T  14278006 gcggaatttgaacaaaccgcaattttctggaatttgcaattgacaacat 14277958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 16127 - 16181
Alignment:
Q  215 tagtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||| |||||||||||||||| || ||||||||||| |||| ||||||||||||    
T  16127 tagtgtagcggaatttgaacaatccactattttccaccatctacaattgacaaca 16181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 31384 - 31438
Alignment:
Q  215 tagtggagcggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||| |||||||||||||||| || ||||||||||| |||| ||||||||||||    
T  31384 tagtgtagcggaatttgaacaatccactattttccaccatctacaattgacaaca 31438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 31712 - 31757
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    ||||||||||||| || ||||||||||| |||| ||||||||||||    
T  31712 ggaatttgaacaatccactattttccaccatctacaattgacaaca 31757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 10394022 - 10393969
Alignment:
Q  222 gcggaatttgaacaaaccgctattttccacaatctgcaattgacaacattgcat 275  Q
    ||||||||| |||||||||||||||||| ||||| |||||||| |||| |||||    
T  10394022 gcggaatttaaacaaaccgctattttccgcaatccgcaattgataacactgcat 10393969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 31582075 - 31582030
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||||||||||||| |||||||||||||| ||| ||| ||||||    
T  31582075 ggaatttgaacaaaccactattttccacaatttgcgattcacaaca 31582030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 31738971 - 31739016
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaaca 269  Q
    |||||| ||||||||| ||||||  |||||||||||||||||||||    
T  31738971 ggaattagaacaaaccactatttatcacaatctgcaattgacaaca 31739016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 25207466 - 25207418
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaacattg 272  Q
    ||||||||||||||| | |||||||| |||||||| || ||||||||||    
T  25207466 ggaatttgaacaaactgttattttccgcaatctgcgatcgacaacattg 25207418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 35069770 - 35069726
Alignment:
Q  224 ggaatttgaacaaaccgctattttccacaatctgcaattgacaac 268  Q
    |||||||||||||||| ||||||||| || | |||||||||||||    
T  35069770 ggaatttgaacaaaccactattttccgcagtttgcaattgacaac 35069726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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