View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14785_low_6 (Length: 371)
Name: NF14785_low_6
Description: NF14785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14785_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 14009138 - 14009464
Alignment:
| Q |
17 |
cattgttgtttgtatcagctaatatttaacttctttagaactgatgcttatacttatctttgtgtcagcaggaccttaatcaatgtaaagtgaaagacaa |
116 |
Q |
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| T |
14009138 |
cattgttgtttgtatcagctaatatttaacttctttaaaactgatgcttatacttatctttgtgtcagcaggaccttaatcaatgtaaagtgaaagacaa |
14009237 |
T |
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| Q |
117 |
ggtagaaatgaaaaataataagtatatagatcctttcctcaatgtacattatttttatatgggcaagttgaaggcaagtagcttctgcctgggcaaggaa |
216 |
Q |
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| T |
14009238 |
ggtagaaatgaaaaataataagtatatagatcctttcctcaatgtacattatttttatatgggcaagttgaaggcaagtagcttctgcctgggcaaggaa |
14009337 |
T |
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| Q |
217 |
ggtgttgggttaaaaatttgacgtgatgctctatgcttttggacttttgctctatgctctctgtgtttaaagaaaattactacatcaaatatatgttttt |
316 |
Q |
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| T |
14009338 |
ggtgttgggttaaaaatttgacgtgatgctctat---------------------gctctctctgtttaaagaaaattactacatcaaatatatgttttt |
14009416 |
T |
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| Q |
317 |
ataatgcatttgtaatgataagctacaaatttagttggatatgatgat |
364 |
Q |
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| T |
14009417 |
ataatgcatttgtaatgataagctacaaatttagttggatatgatgat |
14009464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 40910680 - 40910754
Alignment:
| Q |
22 |
ttgtttgtatcagctaatatttaacttcttt-agaactgatgcttatacttatctttgtgtcagcaggaccttaa |
95 |
Q |
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| T |
40910680 |
ttgtttgtatcagatcatatttaacttcttttacaactgatgcacatacttatctttgtgtcagcagtaccttaa |
40910754 |
T |
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