View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14785_low_9 (Length: 305)
Name: NF14785_low_9
Description: NF14785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14785_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 49256458 - 49256737
Alignment:
| Q |
14 |
ctctcgacgggtgttaggttatatatttagcaatgagcaggatgtggtggattatgtcacagatatggctc-----ataagtctatctgttatagtagat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49256458 |
ctctcgacgggtgttaggttatatatttagcaatgagcaggatgtggtggattatgtcacagatatggctcctctaataagtctatctgttatagtagat |
49256557 |
T |
|
| Q |
109 |
agtttacatggtaccctttcaggttggctctttatttctttttactataattcaatgcacaataattcannnnnnncatgaaattcatggtacctgaatg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49256558 |
agtttacatggtaccctttcaggttggctctttatttcttttttctataattcaatgcacaataattcatttttttcatgaaattcatggtacctgaatg |
49256657 |
T |
|
| Q |
209 |
aattatgacatggaatgtaacacttgtctattataggtattgctagaggatgtggttggcagaagttgggagcatatgtg |
288 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49256658 |
aattatgacatggaatgtaacacctgtctattataggtattgctagaggatgtggttggcagaaattgggagcatatgtg |
49256737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 288
Target Start/End: Original strand, 49269425 - 49269697
Alignment:
| Q |
23 |
ggtgttaggttatatatttagcaatgagcaggatgtggtggattatgtcacagatatgg-----ctcataagtctatctgttatagtagatagtttacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||| || ||||||||| |||||||||||| |
|
|
| T |
49269425 |
ggtgttaggttatatatttagcaatgagcaggatgtggtggactatgtcacacatatggttcctctaataagtataaatgttatagtggatagtttacat |
49269524 |
T |
|
| Q |
118 |
ggtaccctttcaggttggctctttatttctttttactataattcaatgcacaataattcannnnnnncatgaaattcatggtacctgaatgaattatgac |
217 |
Q |
| |
|
|| ||||||||||||||| |||| |||| |||||| || |||||||||||| |||| ||| || || | | | ||||||||||||| |
|
|
| T |
49269525 |
ggcaccctttcaggttgg--ctttttttc--tttact---atccaatgcacaatacttca-tttgttcattaagtttctactgcatgaatgaattatgct |
49269616 |
T |
|
| Q |
218 |
atggaatgtaacacttgtctattat----------aggtattgctagaggatgtggttggcagaagttgggagcatatgtg |
288 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49269617 |
atggaatgtaacacttgtccattatatttatatacaggtattgctagaggatctggttggcagaagttgggagcatatgtg |
49269697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 30379883 - 30379851
Alignment:
| Q |
240 |
tataggtattgctagaggatgtggttggcagaa |
272 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
30379883 |
tataggtattgcaagaggatgtggttggcagaa |
30379851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University