View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14786_high_3 (Length: 388)

Name: NF14786_high_3
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14786_high_3
NF14786_high_3
[»] chr5 (6 HSPs)
chr5 (74-372)||(14829785-14830088)
chr5 (33-79)||(14830442-14830488)
chr5 (39-91)||(42108388-42108440)
chr5 (47-93)||(39981442-39981488)
chr5 (43-92)||(36439739-36439788)
chr5 (39-87)||(32906659-32906707)
[»] chr2 (6 HSPs)
chr2 (33-90)||(1845107-1845164)
chr2 (33-94)||(38556712-38556773)
chr2 (39-93)||(16202322-16202376)
chr2 (39-93)||(39848740-39848794)
chr2 (33-94)||(9716503-9716564)
chr2 (39-83)||(5880069-5880113)
[»] chr7 (3 HSPs)
chr7 (33-93)||(40727372-40727432)
chr7 (39-92)||(32420178-32420231)
chr7 (43-83)||(9270980-9271020)
[»] chr3 (6 HSPs)
chr3 (33-94)||(9503646-9503707)
chr3 (33-90)||(53073361-53073418)
chr3 (37-93)||(21524033-21524089)
chr3 (33-93)||(51880488-51880548)
chr3 (39-81)||(20601414-20601456)
chr3 (39-83)||(11837141-11837185)
[»] chr4 (6 HSPs)
chr4 (39-94)||(32519601-32519656)
chr4 (33-93)||(55957836-55957896)
chr4 (47-93)||(26659988-26660034)
chr4 (33-93)||(22748979-22749039)
chr4 (41-84)||(6829251-6829294)
chr4 (39-94)||(11432685-11432740)
[»] chr8 (4 HSPs)
chr8 (39-93)||(31588151-31588205)
chr8 (39-92)||(44652736-44652789)
chr8 (39-93)||(40691031-40691085)
chr8 (39-87)||(2510346-2510394)
[»] chr1 (8 HSPs)
chr1 (35-87)||(2473070-2473122)
chr1 (33-92)||(25412515-25412574)
chr1 (39-93)||(45338908-45338962)
chr1 (47-93)||(14346512-14346558)
chr1 (33-90)||(3839515-3839572)
chr1 (47-88)||(22863077-22863118)
chr1 (41-90)||(51370038-51370087)
chr1 (41-93)||(4441407-4441459)
[»] chr6 (2 HSPs)
chr6 (33-94)||(24556849-24556910)
chr6 (42-85)||(5331450-5331493)
[»] scaffold0373 (1 HSPs)
scaffold0373 (41-84)||(7126-7169)
[»] scaffold0036 (1 HSPs)
scaffold0036 (43-93)||(53228-53278)
[»] scaffold0330 (1 HSPs)
scaffold0330 (39-95)||(11231-11287)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 74 - 372
Target Start/End: Complemental strand, 14830088 - 14829785
Alignment:
Q  74 ctagcctatttccatccctaaaggatccaatgaagttgcttagtttaaatttttatcactgtaccaattttggaatttcttttgttgttgttgtt---ag 170  Q
    |||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  14830088 ctagcctattcccatccgtaaaggacccaatgaagttacttagtttaaatttttatcactgtaccaattttggaatttcttttgttgttgttgttgttag 14829989  T
Q  171 cttcgtatttctttcaatttgtatttggagatattttcttttgatccaataggccttctctttgttagttagaaattgttataaatagagaagggtgtct 270  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14829988 cttcgcatttctttcaatttgtatttggagatattttcttttgatccaataggccttctctttgttagttagaaattgttataaatagagaagggtgtct 14829889  T
Q  271 ctatcgtaaaattgttatatc--atgatgtacgcaagcaaacgccaactattatatgaagagaaagtacatagttaattttcagtgacaggtcacattcg 368  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14829888 ctatcgtaaaattgttatatcatatgatgtacgcaagcaaacgccaactattatatgaagagaaagtacatagttaattttcagtgacaggtcacattcg 14829789  T
Q  369 tgac 372  Q
    ||||    
T  14829788 tgac 14829785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 14830488 - 14830442
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcc 79  Q
    ||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  14830488 tatggcaggccaggcttaggccttgcaaagcctagctcggcctagcc 14830442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 42108440 - 42108388
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccc 91  Q
    |||||||||| ||| |||||||||||||||| || |||||||||| |||||||    
T  42108440 aggccaggctcaggtcttgcaaagcctaacttggcctagcctattcccatccc 42108388  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 39981488 - 39981442
Alignment:
Q  47 cttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    |||||||||||||||||||||||||  |||||||| | |||||||||    
T  39981488 cttaggccttgcaaagcctaactcgacctagcctactcccatcccta 39981442  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 36439788 - 36439739
Alignment:
Q  43 caggcttaggccttgcaaagcctaactcggtctagcctatttccatccct 92  Q
    |||||| ||||||||||||||||||||||| ||| |||||| ||| ||||    
T  36439788 caggctcaggccttgcaaagcctaactcggcctaacctattcccacccct 36439739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 32906707 - 32906659
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttcca 87  Q
    |||||||||||||||||| |||||||||| ||||  || ||||||||||    
T  32906707 aggccaggcttaggccttacaaagcctaattcggcttaacctatttcca 32906659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 1845164 - 1845107
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcc 90  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||    
T  1845164 tatggtaggtcaggcttaggccttgcaaagcctaactcggcctagcctattcccatcc 1845107  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 38556712 - 38556773
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccctaa 94  Q
    ||||| ||| ||| ||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  38556712 tatggcaggtcagacttaggccttgcaaagcctaactcggcttagcctattcccatccctaa 38556773  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 16202322 - 16202376
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    ||||||| |||||||||||||||||||| |||||  ||||||||| |||||||||    
T  16202322 aggccagacttaggccttgcaaagcctagctcggcttagcctattcccatcccta 16202376  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 39848740 - 39848794
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    |||| ||||||||||||||||||||||  ||||| |||||||||| |||||||||    
T  39848740 aggctaggcttaggccttgcaaagccttgctcggcctagcctattcccatcccta 39848794  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 9716503 - 9716564
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccctaa 94  Q
    ||||| ||||||  |||||| ||||||||||||| ||||| |||||||||| ||||||||||    
T  9716503 tatggcaggccaaacttaggtcttgcaaagcctagctcggcctagcctattcccatccctaa 9716564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 5880113 - 5880069
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatt 83  Q
    ||||||| |||||||||||||||||||| ||||  ||||||||||    
T  5880113 aggccagacttaggccttgcaaagcctagctcgacctagcctatt 5880069  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 40727372 - 40727432
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    |||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  40727372 tatggtagaccagacttagaccttgcaaagcctaactcggcctagcctatttccatcccta 40727432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 32420231 - 32420178
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccct 92  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||    
T  32420231 aggccaggcttaggccttgcaaagcctagctcggcctagcctattcccacccct 32420178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 9271020 - 9270980
Alignment:
Q  43 caggcttaggccttgcaaagcctaactcggtctagcctatt 83  Q
    |||||| || |||||||||||||||||||| ||||||||||    
T  9271020 caggctcagaccttgcaaagcctaactcggcctagcctatt 9270980  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 9503707 - 9503646
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccctaa 94  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||    
T  9503707 tatggcaggccaggcttaggccttgcaaagcctaactcggcctaacctattcctatccctaa 9503646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 53073418 - 53073361
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcc 90  Q
    ||||| ||| ||| |||||||||||||||||||||||||| ||||| |||| ||||||    
T  53073418 tatggcaggtcagacttaggccttgcaaagcctaactcggactagcatattcccatcc 53073361  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 21524033 - 21524089
Alignment:
Q  37 gtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    |||||||||||| || |||||||||||||||||| | ||| |||||| |||||||||    
T  21524033 gtaggccaggctcagaccttgcaaagcctaactcagcctatcctattcccatcccta 21524089  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 51880488 - 51880548
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    ||||| |||||| ||||||||||||||||| ||||||||| ||| ||||||  ||||||||    
T  51880488 tatggcaggccaagcttaggccttgcaaagtctaactcggcctaacctattctcatcccta 51880548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 20601456 - 20601414
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagccta 81  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  20601456 aggccaggctcaggccttgcaaagcctagctcggcctagccta 20601414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 11837141 - 11837185
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatt 83  Q
    ||||||||||||| |||||||||||||| ||||| ||| ||||||    
T  11837141 aggccaggcttagaccttgcaaagcctagctcggcctaacctatt 11837185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 32519656 - 32519601
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccctaa 94  Q
    |||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||    
T  32519656 aggccaggcttaggccttgcaaagcctaactcagcctaacctattcccatccctaa 32519601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 55957836 - 55957896
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    ||||| |||||||||||||||||||||||||||| ||||| |||| |||||  ||||||||    
T  55957836 tatggcaggccaggcttaggccttgcaaagcctagctcggcctagtctattctcatcccta 55957896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 26660034 - 26659988
Alignment:
Q  47 cttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||||    
T  26660034 cttaggccttgcaaagcctagctcggcctagcctattcccatcccta 26659988  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 22749039 - 22748979
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    ||||| ||| |||||||||||||||||||||||| ||||| ||| ||||||  ||||||||    
T  22749039 tatggcaggtcaggcttaggccttgcaaagcctagctcggcctaacctattctcatcccta 22748979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 6829251 - 6829294
Alignment:
Q  41 gccaggcttaggccttgcaaagcctaactcggtctagcctattt 84  Q
    ||||| |||||||||||||||||||||||||| | |||||||||    
T  6829251 gccagacttaggccttgcaaagcctaactcggcccagcctattt 6829294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 11432685 - 11432740
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccctaa 94  Q
    |||||||| | ||||||| |||||| || || ||||||||||||||||||||||||    
T  11432685 aggccaggttcaggccttacaaagcttagcttggtctagcctatttccatccctaa 11432740  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 31588151 - 31588205
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    |||||||||| ||||||||||||||||||||  | ||||||||||||||||||||    
T  31588151 aggccaggctcaggccttgcaaagcctaacttagcctagcctatttccatcccta 31588205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 44652736 - 44652789
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccct 92  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||    
T  44652736 aggccaggctcaggccttgcaaagcctagctcggcctagcctattcccatccct 44652789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 40691085 - 40691031
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    ||||||| || ||||||||||||||||| ||||| |||||||||| |||||||||    
T  40691085 aggccagactcaggccttgcaaagcctagctcggcctagcctattcccatcccta 40691031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 2510394 - 2510346
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttcca 87  Q
    |||||||||| ||||||||||||||||| ||||| ||| ||||||||||    
T  2510394 aggccaggctcaggccttgcaaagcctagctcggcctaacctatttcca 2510346  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 2473070 - 2473122
Alignment:
Q  35 tggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttcca 87  Q
    ||||||||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  2473070 tggtaggccagacttagaccttgcaaagcctaactcagcctagcctatttcca 2473122  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 25412515 - 25412574
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccct 92  Q
    |||| |||| |||||||||||||||||||||||| ||||| ||||||||||  |||||||    
T  25412515 tatgataggtcaggcttaggccttgcaaagcctagctcgggctagcctattctcatccct 25412574  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 45338962 - 45338908
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||  ||||||||    
T  45338962 aggccaggctcaggccttgcaaaacctaactcggcctagcctattctcatcccta 45338908  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 14346512 - 14346558
Alignment:
Q  47 cttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    ||||| ||||||||| | ||||||||||||||||||||||| |||||    
T  14346512 cttagaccttgcaaaacttaactcggtctagcctatttccaccccta 14346558  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 3839515 - 3839572
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcc 90  Q
    ||||| |||| ||||||||||||||||||||||| |||||  || |||||| ||||||    
T  3839515 tatggcaggctaggcttaggccttgcaaagcctagctcggcttaccctattcccatcc 3839572  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 22863118 - 22863077
Alignment:
Q  47 cttaggccttgcaaagcctaactcggtctagcctatttccat 88  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  22863118 cttaggccttgcaaagcctaactcgacctagcctattcccat 22863077  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 51370087 - 51370038
Alignment:
Q  41 gccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcc 90  Q
    |||||||| ||| ||| |||||||||||||||  ||||||||||||||||    
T  51370087 gccaggctcaggtcttacaaagcctaactcggcatagcctatttccatcc 51370038  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 4441407 - 4441459
Alignment:
Q  41 gccaggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    |||||||||||||||||||||||||| ||||   |||||||||  ||||||||    
T  4441407 gccaggcttaggccttgcaaagcctagctcgccttagcctattctcatcccta 4441459  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 24556849 - 24556910
Alignment:
Q  33 tatggtaggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccctaa 94  Q
    ||||| ||||||||||||| ||||| |||||||| ||||  |||||||||| ||||||||||    
T  24556849 tatggcaggccaggcttagaccttgtaaagcctagctcgacctagcctattcccatccctaa 24556910  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 5331450 - 5331493
Alignment:
Q  42 ccaggcttaggccttgcaaagcctaactcggtctagcctatttc 85  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||    
T  5331450 ccaggcttaggccttgcaaagtctatctcggcctagcctatttc 5331493  T

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Target: scaffold0373 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 7169 - 7126
Alignment:
Q  41 gccaggcttaggccttgcaaagcctaactcggtctagcctattt 84  Q
    ||||| |||||||||||||||||||||||||| | |||||||||    
T  7169 gccagacttaggccttgcaaagcctaactcggcccagcctattt 7126  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 53228 - 53278
Alignment:
Q  43 caggcttaggccttgcaaagcctaactcggtctagcctatttccatcccta 93  Q
    |||||| ||||||||||||||||| ||||| ||||||||||  ||||||||    
T  53228 caggctcaggccttgcaaagcctagctcggcctagcctattatcatcccta 53278  T

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Target: scaffold0330 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 11231 - 11287
Alignment:
Q  39 aggccaggcttaggccttgcaaagcctaactcggtctagcctatttccatccctaaa 95  Q
    ||||||| | |||||||||||||||| | ||||| |||||||||| ||| |||||||    
T  11231 aggccagacctaggccttgcaaagcccagctcggcctagcctattcccacccctaaa 11287  T

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