View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14786_high_7 (Length: 325)
Name: NF14786_high_7
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14786_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 34029694 - 34029392
Alignment:
| Q |
5 |
attccatcaataattcaagaaaggatgatgcctgaaataattcaagaaagtctcatgattcagtttctcccgtcaattctatctag-ctcctccacctaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34029694 |
attccatcaataattcaagaaaggatgatgcctgaaataattcaagaaagtctcatgattcagtttctcccgtcaattctatctaggctcctccacctaa |
34029595 |
T |
|
| Q |
104 |
ggaattacaggggaatacttctaaactctcagagaaaacggaaatgaaaaggaacaactcacatagttcccttcttctaaaagtctcaagatttaatcaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34029594 |
ggaattacaggggaatacttctaaactctcagagaaaacggaaatgaaaaggaacacctcacatagttcccttcttctaaaagtctctagatttaatcaa |
34029495 |
T |
|
| Q |
204 |
gaaaatcatattcctttaaagattttgacttgataaacaacaaagcaaaatataacaaacaagatgcctgaaatgagttttcttgacttgtccatatggt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34029494 |
gaaaatcatattcctttaaagattttgacttgataaacaacaaagcaaaatataacaaacaagatgcctgaaatgagttttcttgacttgtccatatggt |
34029395 |
T |
|
| Q |
304 |
atg |
306 |
Q |
| |
|
||| |
|
|
| T |
34029394 |
atg |
34029392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University