View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14786_low_10 (Length: 301)

Name: NF14786_low_10
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14786_low_10
NF14786_low_10
[»] chr1 (1 HSPs)
chr1 (17-301)||(24774433-24774717)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 24774717 - 24774433
Alignment:
Q  17 cattcatatctataagccgaaccttcaacaaacgcaaagaaatagatgcataattgcaaacaagtatgtcaaagaaatcgatagtccaccaaactaccaa 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24774717 cattcatatcgataagccgaaccttcaacaaacgcaaagaaatagatgcataattgcaaacaagtatgtcaaagaaatcgatagcccaccaaactaccaa 24774618  T
Q  117 tgaatagttttatttattaattaatcataaaaataataagaatcgtaaataaacaagaagaatgataatccaaacgcgtgctatcaaagtaaaaacaaga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  24774617 tgaatagttttatttattaattaatcataaaaataataagaatcgtaaataaaccataagaatgataatccaaacgcatgctatcaaagtaaaaacaaga 24774518  T
Q  217 ataaaagcctaaaacaccaccaaatcaccattaactaatccaaactatatagtttgaaaaactaaataatcataatccaaaatct 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24774517 ataaaagcctaaaacaccaccaaatcaccattaactaatccaaactatatagtttgaaaaactaaataatcataatccaaaatct 24774433  T

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