View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14786_low_12 (Length: 227)
Name: NF14786_low_12
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14786_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 29240734 - 29240514
Alignment:
| Q |
6 |
aagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagtactctaaaattgaaatnnnnnnnngtaata |
105 |
Q |
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| T |
29240734 |
aagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagaactctaaaattgaaataaaaaaa-gtaata |
29240636 |
T |
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| Q |
106 |
attacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagtaaaacgagaaacaaaattcaacatcagattgtgt |
205 |
Q |
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| T |
29240635 |
attacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagcaaaacgagaaacggaattcaacatcagattgtgt |
29240536 |
T |
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| Q |
206 |
ggacttacaaaaatacggcaat |
227 |
Q |
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|||| | ||||||||||||||| |
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| T |
29240535 |
ggacatccaaaaatacggcaat |
29240514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 16828272 - 16828050
Alignment:
| Q |
10 |
acccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagtactctaaaattgaaatnnnnnnnng-----taat |
104 |
Q |
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| T |
16828272 |
accccccataaaaataaaaatgatccattaagattaacaggacaacacgttatgtttttcaatagaactgtaaaattgatataaaaaaaataataataag |
16828173 |
T |
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| Q |
105 |
aattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagtaaaacgagaaacaaaattcaacatcagattgtg |
204 |
Q |
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| T |
16828172 |
aattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagtaaaacgagaaagggaaatcaacatcagattgtg |
16828073 |
T |
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| Q |
205 |
tggacttacaaaaatacggcaat |
227 |
Q |
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| T |
16828072 |
tggacttacaaaaatatggcaat |
16828050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 846375 - 846427
Alignment:
| Q |
109 |
acctttcaatgactgtaagcaaatttgttggatgatatttatctttcaaccta |
161 |
Q |
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| T |
846375 |
acctttcaattactgtaagtaaatttgttggatgatacttatctttcaaccta |
846427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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