View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14786_low_15 (Length: 215)
Name: NF14786_low_15
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14786_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 41288433 - 41288359
Alignment:
| Q |
123 |
acagttttaacaacctgagcctcttcatcaccatgaatacaagaaaacccaacatcctcaggataagcaggtaag |
197 |
Q |
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| T |
41288433 |
acagttttaacaacctgagcctcttcatcaccatgaatacaagaaaacccaacatcctcaggataagcaggtaag |
41288359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 41288537 - 41288497
Alignment:
| Q |
19 |
gtatcatacaagcttcaagtaacccaatactcttccctctc |
59 |
Q |
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| T |
41288537 |
gtatcatacaagcttcaagtaacccaatactcttccctctc |
41288497 |
T |
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