View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14786_low_2 (Length: 410)
Name: NF14786_low_2
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14786_low_2 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0154 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 5464982 - 5464597
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttagg |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5464982 |
ccacactcatcacacctcttagctcattggatcccccttcggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttagg |
5464883 |
T |
|
| Q |
118 |
tgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5464882 |
tgttggtggtgttgttcgcaaccacgatggagattggatagcaggttttgctcactatgaagttggaggtgatgtgttattagctgagttacgtactatc |
5464783 |
T |
|
| Q |
218 |
cagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatc |
314 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5464782 |
cagatagttcttgatttttgtagtaaaaaagattatgtcaacattatttgttagagtggttgtttggaagcagttgaccttattattgttgattttgatc |
5464683 |
T |
|
| Q |
315 |
ataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5464682 |
ataccttgcacacttatgctactagcatccttcatattagagatgttttacatggaaatggaaatagaacattggtgcatattctt |
5464597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 25828820 - 25828440
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccc-tctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttag |
116 |
Q |
| |
|
|||||||||| | |||||||||| |||||||||||| || |||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
25828820 |
ccacactcatcgcgcctcttagctcattggatcccccctccggaaggtacacttaaactcaatattgatggtagctttttagaagactttggttgtttag |
25828721 |
T |
|
| Q |
117 |
gtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctat |
216 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
25828720 |
gtattggtggtgttgttcgcaaccatgatggagattggataactggtttttctcgctatgaagttggaagtgatgcgttattagctgaattacgtgctat |
25828621 |
T |
|
| Q |
217 |
ccagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgat |
313 |
Q |
| |
|
||| |||| |||||||||||| |||||||| |||||||||| ||| |||||||||| ||||||| ||||||||||||| ||| |||||||| |||| |
|
|
| T |
25828620 |
ccatataggtcttgatttttgtagtaaaaaaggctatgtcaacattatatgtgagagtgattgtttgaaagcagttgacctgattgttgttggtcgtgat |
25828521 |
T |
|
| Q |
314 |
cataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcat |
393 |
Q |
| |
|
||||||||||| | |||||||| || |||||||||||||| ||||| | |||||| ||||||||||| ||||||||||||| |
|
|
| T |
25828520 |
cataccttgcagagttatgctattgacatccttcatattaaagatgctctacatgaaaatggaaatacaacattggtgcat |
25828440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 259 - 399
Target Start/End: Complemental strand, 27046330 - 27046190
Alignment:
| Q |
259 |
tatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagagat |
358 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||| | ||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27046330 |
tatttgtgagagtgatcgattggaagcagttgacttgattattgttggcgt-gatcataccttacacacttatgctaccgtcatccttcatattagagat |
27046232 |
T |
|
| Q |
359 |
g-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
| |||||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
27046231 |
gttttacatggaaatgaaaatacaacattggtgcatgttctt |
27046190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 399
Target Start/End: Complemental strand, 10329256 - 10329005
Alignment:
| Q |
156 |
tagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttgatttttgtactaaaaaagattatgt |
252 |
Q |
| |
|
|||| ||||| |||||||| || ||||||||||||| |||||| | |||||||||||||| | |||| || |||||| || |||||||| ||||| |
|
|
| T |
10329256 |
tagcaggtttctctcactataaaattggaggtgatgtattattaacggagttacgtgctatgtaaataggtcttaatttttatagtaaaaaaggctatgt |
10329157 |
T |
|
| Q |
253 |
caacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttat----gctactgtcatccttca |
348 |
Q |
| |
|
||||| | |||||||||||| ||||| ||||| ||||||||| ||||||| |||| |||||||||||||||||||||| |||| || ||| |||| |
|
|
| T |
10329156 |
caacattttttgtgagagtgattgttaggaaggagttgacctgattattgatggtcgtgatcataccttgcacacttatatatgctattgacatttttca |
10329057 |
T |
|
| Q |
349 |
tattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
|||||||||| ||||||||||||||| || | ||||||||||||| ||||| |
|
|
| T |
10329056 |
cattagagatgctttacatggaaatgggaacacaacattggtgcatgttctt |
10329005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 5949696 - 5949606
Alignment:
| Q |
310 |
tgatcataccttgcacacttatgctactgtcatccttcatattagagat-gtttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
5949696 |
tgatcataccttgcacacttatactaccaacatccttcatattcgagatattttacatgaaaatggaaatacaacattggtgcatgttctt |
5949606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 12527314 - 12527391
Alignment:
| Q |
323 |
cacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
12527314 |
cacacttatgctactaacatccttcatattagagacgttttacatgaaaatggaaatacaacattggtgcatgttctt |
12527391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 12501680 - 12501757
Alignment:
| Q |
323 |
cacacttatgctactgtcatccttcatattagagatgttt-acatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
12501680 |
cacacttattctacttacatccttcatattagagacgttttacatgaaaatggaaatacaacattggtgcatgttctt |
12501757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 28717837 - 28717758
Alignment:
| Q |
113 |
ttaggtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgt |
192 |
Q |
| |
|
|||||||||||||||||| || |||| || ||| |||||| |||||| ||||||||||| | || ||||||||||||| |
|
|
| T |
28717837 |
ttaggtgttggtggtgttatttgcaaacattatgatgattgggtagctgatttttctcactgcaaaattggaggtgatgt |
28717758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 36817491 - 36817451
Alignment:
| Q |
311 |
gatcataccttgcacacttatgctactgtcatccttcatat |
351 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
36817491 |
gatcataccttgcacacttatgctactaacatacttcatat |
36817451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 32 - 393
Target Start/End: Original strand, 11075565 - 11075930
Alignment:
| Q |
32 |
cctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttg |
131 |
Q |
| |
|
|||||||||| |||||||||||||| |||| || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11075565 |
cctcttagctcattggatccccctccggaaagtgcacgcaaactcaatattgatggtagctttctagaagattttggttgtttaggtgctggtggtgttg |
11075664 |
T |
|
| Q |
132 |
ttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttga |
228 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11075665 |
ttcgcaaccacgatagagattagataactggtttttcccactatgaagctggaggtgatgcgttattagctgagttacgtgctatccagataggtcttga |
11075764 |
T |
|
| Q |
229 |
tttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacact |
328 |
Q |
| |
|
|||||||| | |||||| |||||||||| |||||||||||||| ||||||||||||||||||| | ||||||| | || ||||||||||||||||||| |
|
|
| T |
11075765 |
tttttgtagttaaaaaggctatgtcaacattatttgtgagagtgattgtttggaagcagttgacttgattattgcttgtcgtgatcataccttgcacact |
11075864 |
T |
|
| Q |
329 |
tatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcat |
393 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
11075865 |
tatgctactaacatccttcatattaaagatgctttacatgaaaatggaaatacaacattggtgcat |
11075930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 2887258 - 2887637
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccc-tctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttag |
116 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||| | ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2887258 |
ccacactcatggcgcctcttagctcattggatcccccctacggaaggtttactcaaactcaatattgatggtagctttttagaagattttggttgtttag |
2887357 |
T |
|
| Q |
117 |
gtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctat |
216 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || | ||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
2887358 |
gtgctggtggtgttgttcgcaaccacgatagagattgaatagctggtttttctcactatgatgctggaggtgatgcgttattagctgcgttacgtgatat |
2887457 |
T |
|
| Q |
217 |
ccagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgat |
313 |
Q |
| |
|
||| |||| |||||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| || | |||| |
|
|
| T |
2887458 |
ccaaataggtcttgatttttgtagtgaaaaagactatgtcaacattatttgcgagagtggttgtttggaagcagttgacctgattattgctgatcgtgat |
2887557 |
T |
|
| Q |
314 |
cataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcat |
393 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
2887558 |
cata-cttgcacacttatgctactgtcatccttcatattagagatgatttatatggaaatgaaaatacaacattggtgcat |
2887637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 32 - 399
Target Start/End: Complemental strand, 16824512 - 16824141
Alignment:
| Q |
32 |
cctcttagcttattggatccccc-tctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgtt |
130 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||||| |
|
|
| T |
16824512 |
cctcttagctcattggatcccccctccagaaggtacactgaaactcaatattgatggtagctttctagaagatcttggttgtttaggtgctgatggtgtt |
16824413 |
T |
|
| Q |
131 |
gttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagata---gttg |
227 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| |||||||||||| |||| |||||||||| |||||||||||||||||||| ||||| |||| ||| |
|
|
| T |
16824412 |
gttcgcaaccacaatggagattggataactgatttttctcactatgaagcgggaggtgatgcgttattagctgagttacgtgttatcctgatatgtcttg |
16824313 |
T |
|
| Q |
228 |
atttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacac |
327 |
Q |
| |
|
|||||| || |||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||||| |||||||| |
|
|
| T |
16824312 |
atttttatagtaaaaaaggttatgtcaacattatttgtgagagt-gttgtttggaagcagttgacctgattattgctggtcgagatcatactttgcacac |
16824214 |
T |
|
| Q |
328 |
ttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||| |||| ||||| |
|
|
| T |
16824213 |
ttatgctactgacatccttcatattagagatgctttacatgaaaatgaaaatacaacattggcgcatgttctt |
16824141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 60 - 399
Target Start/End: Complemental strand, 39997881 - 39997538
Alignment:
| Q |
60 |
aaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagattggatagc |
159 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
39997881 |
aaggtatacttaaactcaatattgatggtagctttctacaagattttagttgtttagatgttggtggtgttgttcgcaaccacgatgcagatcggatagc |
39997782 |
T |
|
| Q |
160 |
tggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttgatttttgtactaaaaaagattatgtcaac |
256 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||| |||||||| ||||| |||| |
|
|
| T |
39997781 |
tggtttttctcactacaaagttggaggtgatgtgttatcagctgagtgacgtgctatccagacaggtcttgatttttgtagtaaaaaaggttatgccaac |
39997682 |
T |
|
| Q |
257 |
aatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagag |
356 |
Q |
| |
|
| ||||| |||||||| ||||||| ||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||| ||| | ||||||||||| |
|
|
| T |
39997681 |
attatttatgagagtgattgtttgaaagcagttgacctgattattgctggtcgtgatcataccttgcaaacttatgctacttacattcatcatattagag |
39997582 |
T |
|
| Q |
357 |
atg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||| ||| ||||| ||| |||| | ||||||| ||||| ||||| |
|
|
| T |
39997581 |
atgctttccatgggaatagaaacacaacattgatgcatgttctt |
39997538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 8266453 - 8266842
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttagg |
117 |
Q |
| |
|
|||||||||| || ||| |||| ||||||||| ||| | ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
8266453 |
ccacactcatcacgccttttagtttattggattcccgtttggaaggtacacttaaactcaatattgatggtagctttttagaagattttggttatttagg |
8266552 |
T |
|
| Q |
118 |
tgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatc |
217 |
Q |
| |
|
|| |||||||||||| ||||||||||| ||||||| |||| || ||||||||||||| ||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
8266553 |
tgctggtggtgttgtgcgcaaccacgacggagattcgataactagtttttctcactatgaagttggaggtggtgcattattagctgagttacgtactatc |
8266652 |
T |
|
| Q |
218 |
cagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatc |
314 |
Q |
| |
|
||||||| |||||||||||| | ||||| |||| ||||| ||||||||||| || ||||||||||||||||||| | ||| || |||| || || |
|
|
| T |
8266653 |
cagataggtcttgatttttgtagtctaaaaggctatgccaacattatttgtgagaatgattgtttggaagcagttgacatgcttactgatggtcgtggtc |
8266752 |
T |
|
| Q |
315 |
ataccttgcaca-----cttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||||| ||||| ||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
8266753 |
ataccttgcacacttatcttatgctactgacatcctt-atattaaagatgttttacatggaaatggtaatacaacattggtgcatgttctt |
8266842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 152 - 399
Target Start/End: Original strand, 18565693 - 18565944
Alignment:
| Q |
152 |
tggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagat-agtt--gatttttgtactaaaaaagatt |
248 |
Q |
| |
|
|||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||| | |
|
|
| T |
18565693 |
tggatagctgatttttttcactatgaagctggaggtgatgtgttattagctgagttacgtgctatccagattagtctcgatttttgtagtccaaaagact |
18565792 |
T |
|
| Q |
249 |
atgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttca |
348 |
Q |
| |
|
|| |||||| |||||||||||||| ||||||| ||| ||||||||| ||||||| |||| |||| |||| |||||||||||||||| || ||| ||||| |
|
|
| T |
18565793 |
atctcaacattatttgtgagagtgattgtttgaaagtagttgacctgattattgatggtcgtgattatacattgcacacttatgctattgacatacttca |
18565892 |
T |
|
| Q |
349 |
tattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||| ||||| || |||| | |||| ||||||||||||| ||||| |
|
|
| T |
18565893 |
tattagagatgctttacttgaaaatagtaatacaacattggtgcatgttctt |
18565944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 137 - 399
Target Start/End: Original strand, 9427547 - 9427812
Alignment:
| Q |
137 |
aaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttgattttt |
233 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||||| ||||||| |||||||| ||||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
9427547 |
aaccacgatggagattgaataactgatttttctcactatgaagttg-aggtgatgcgttattagctgagttccgtgctattcagataggtcttgattttt |
9427645 |
T |
|
| Q |
234 |
gtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgc |
333 |
Q |
| |
|
||| | |||| |||| ||||| |||||||||||||| ||||||||| |||||||| | ||| || |||| ||||||||||||||||| |||| | |
|
|
| T |
9427646 |
gtagtctaaaatgctatgccaacattatttgtgagagtgattgtttggattcagttgacatgcttactgatggtcgtgatcataccttgcacatttatac |
9427745 |
T |
|
| Q |
334 |
tactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||| |||| || ||||| |||| ||||| |
|
|
| T |
9427746 |
tactgacatccttcatattagagatgttttacatggaaatggtaatacaagattggcgcatgttctt |
9427812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 3621302 - 3620944
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatcc-ccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttag |
116 |
Q |
| |
|
|||||||||| || |||||| || |||||| || |||| |||||||| || |||||| || ||||||||| ||| |||||| ||||| || || | |
|
|
| T |
3621302 |
ccacactcatcacgtctcttaactcattggagcctccctttggaaggttatcttaaactcgatgttgatggtagttttttagaaggctttgggtgctttg |
3621203 |
T |
|
| Q |
117 |
gtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctat |
216 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||||||| || |||||||| |||||||| |
|
|
| T |
3621202 |
gtgttggtggtggtgttcccaaccacgatggagattggatagctggtttttcttgctttaaagttgaaggtgatgtgt--ttggctgagttgcgtgctat |
3621105 |
T |
|
| Q |
217 |
ccagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgat |
313 |
Q |
| |
|
||||| | ||||||||||| || |||| ||| ||||| |||||||||||||||||| |||||||| |||| | || |||||||| |||| |
|
|
| T |
3621104 |
tcagatggatcttgatttttgtcgcaacaaaggctataacaacattatttgtgagagtggttgcttggaagcgtttgagatgtttgttgttggtcgtgat |
3621005 |
T |
|
| Q |
314 |
cataccttgcacacttatgctactgtcatccttcatattagagat-gtttacatggaaatg |
373 |
Q |
| |
|
|||||||| || ||||||| ||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
3621004 |
cataccttacatacttatgttactgacatccttcatattagagatattttacatggaaatg |
3620944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 300
Target Start/End: Original strand, 26479322 - 26479557
Alignment:
| Q |
60 |
aaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagattggatagc |
159 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||||| |||||||| | ||| |||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
26479322 |
aaggtaaactcaaacttaatattgatggtagcttgctagaagactctgg--------gtgttggtggtgttgttcacaaccattatggagatttgatagc |
26479413 |
T |
|
| Q |
160 |
tggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagata---gttgatttttgtactaaaaaagattatgtcaac |
256 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| | ||||||||||| | |||||||| | ||| ||||||||||| || ||| |||| ||| |
|
|
| T |
26479414 |
tggtttttcgcactatgaagttggaggtgatgcgctattagctgagctgcgtgctatttatatatgtcttgatttttgttgcaagaaatgctatgacaat |
26479513 |
T |
|
| Q |
257 |
aatatttgtgagagtggttgtttggaagcagttgaccttattat |
300 |
Q |
| |
|
| |||||||||||||| |||||||||| ||||||| || ||||| |
|
|
| T |
26479514 |
attatttgtgagagtgattgtttggaatcagttgagctgattat |
26479557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 15258657 - 15258794
Alignment:
| Q |
58 |
ggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagattggata |
157 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||| |||||| ||| ||||| | ||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
15258657 |
ggaagatactctcaaactcaatgttgatggtagttttctacaaggctttgggttcttaggtgttggtggtattgttcgtaaccacgacaaagattggatt |
15258756 |
T |
|
| Q |
158 |
gctggtttttctcactacgaagttggaggtgatgtgtt |
195 |
Q |
| |
|
| | |||||| |||| |||||| |||||||| |||| |
|
|
| T |
15258757 |
tcatgattttcttactatgaagtttgaggtgatctgtt |
15258794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 7859141 - 7859230
Alignment:
| Q |
129 |
ttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatcc |
218 |
Q |
| |
|
||||| |||| |||||| ||||| ||||||| | ||||||||||| ||||| ||||||||| ||| || ||||||| |||||||||| |
|
|
| T |
7859141 |
ttgtttgcaatcacgatatagattagatagctagcttttctcactatgaagtatgaggtgatgagttgttgtctgagttgcgtgctatcc |
7859230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 36 - 398
Target Start/End: Complemental strand, 47924677 - 47924310
Alignment:
| Q |
36 |
ttagcttattggatccccc-tctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttc |
134 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47924677 |
ttagctcattggatcccccctctagaaggtacacttaaactcaatattgatggcagctttctagaagattttggttgtttaggtgttggcggtgttgttc |
47924578 |
T |
|
| Q |
135 |
gcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttgattt |
231 |
Q |
| |
|
| | | || ||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
47924577 |
gtagcgacaatggagattggattgctggtttttcacactatgaagttggaggtgatgcattattagctgaattacgtgctatccggataggtcttgattt |
47924478 |
T |
|
| Q |
232 |
ttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttat |
331 |
Q |
| |
|
||||| |||||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||| ||||||| || | |||||||||||||||||||||| |
|
|
| T |
47924477 |
ttgtagtaaaaaaggttaagtcaacattatttgtgagagtgattgtttggaagcagttgacctgattattgatgatcatgatcataccttgcacacttat |
47924378 |
T |
|
| Q |
332 |
gctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattct |
398 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
47924377 |
gctactgacatccttcatattcgagatgttttacatgaaaatggaaatataacattggtgcatattct |
47924310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 50 - 399
Target Start/End: Original strand, 54259108 - 54259460
Alignment:
| Q |
50 |
ccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggag |
149 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| |||||||||||||| |||||| | |||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
54259108 |
ccccctccggaaggtacactcaagctcaatattgatggtagctttccagaagactctggttgtttaggtgatggtggtattgttcgcaaccacattggag |
54259207 |
T |
|
| Q |
150 |
attggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttgatttttgtactaaaaaaga |
246 |
Q |
| |
|
| ||||||||||||||||||||||| | || ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| | |||| ||| |
|
|
| T |
54259208 |
aatggatagctggtttttctcactatg-agctggaggtgatgggttgttagctgagttacgtgctatccagataggtcttgatttttacagtaaataagg |
54259306 |
T |
|
| Q |
247 |
ttatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatcctt |
346 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||||| |||| ||| | | |||||||||| ||||| |||||| |
|
|
| T |
54259307 |
ctatgtcaacattatttgtgagagtgattgtttggaagcagttgacctgtttattgctggttgtgatgataacctacacacttatgttactgatatcctt |
54259406 |
T |
|
| Q |
347 |
catattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
| || |||||||| |||||||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
54259407 |
cgtaatagagatgatttacatggaaatggaaatacaacattggagcatgttctt |
54259460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 41940961 - 41940584
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccc-tctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttag |
116 |
Q |
| |
|
|||||||| | ||| ||||||||| ||||||||| || || |||||||||||| ||| |||||| ||||| ||||||||||||||||| | ||| |
|
|
| T |
41940961 |
ccacactcgtcacatctcttagctcattggatcctccatccggaaggtacacttaaaatcaatattgatgatagctttctagaagatt------ggatag |
41940868 |
T |
|
| Q |
117 |
gtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctat |
216 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41940867 |
ctggtggtggtgtt---cgcaaccacgatggagattggatagctggtttttctcactatgaagctggaggtgatgcgttattagctgagttacgtgctat |
41940771 |
T |
|
| Q |
217 |
ccagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgat |
313 |
Q |
| |
|
| |||| |||||||||||| | ||||| |||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||| ||| |||| |
|
|
| T |
41940770 |
cagaataggtcttgatttttgtaatttaaaaggctatgtcaacattatttgtgagagtgattgtttgaaagcagttgacctgattattgacggtcgtgat |
41940671 |
T |
|
| Q |
314 |
cataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||| ||||| |
|
|
| T |
41940670 |
cataccttgcacacttatgctaccgacatccttcatattagagatgttttacatggaaatggtaatacaacattgatgcatgttctt |
41940584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 398
Target Start/End: Complemental strand, 40656565 - 40656184
Alignment:
| Q |
20 |
acactcatgacacctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtg |
119 |
Q |
| |
|
|||||||| |||||||||| | |||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40656565 |
acactcatcgcacctcttagttcattggatccctttc-ggaaggtacactcaaactcaatattgatggtaactttctagaagattttggttgtttaggtg |
40656467 |
T |
|
| Q |
120 |
ttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatcca |
219 |
Q |
| |
|
| |||||||||||||||||||| || ||||||| ||| |||||||||| |||| |||||| || |||||| |||||||||||||| ||||| |||||| |
|
|
| T |
40656466 |
ctcgtggtgttgttcgcaaccacaatagagattgaataactggtttttc-cactgtgaagttagaagtgatgcgttattagctgagtaacgtgttatcca |
40656368 |
T |
|
| Q |
220 |
gata---gttgatttttgtactaaaaaagattatgtc-aacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatca |
315 |
Q |
| |
|
||| |||||||||||| || |||| ||| ||| |||| |||||||||||||| ||||||| ||||||||||||| ||||||| |||| |||||| |
|
|
| T |
40656367 |
tatatgtcttgatttttgtagtagaaaatgttacgtcaaacattatttgtgagagtgattgtttgaaagcagttgacctgattattgctggtcgtgatca |
40656268 |
T |
|
| Q |
316 |
taccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattct |
398 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
40656267 |
taccttgcacacttatactactaacatatttcatatcagagatgttttacatggaaatggaaatacgacattggtgcatgttct |
40656184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 33 - 393
Target Start/End: Original strand, 50945668 - 50946037
Alignment:
| Q |
33 |
ctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgat---ggtagctttctagaagattttggttgtttaggtgttggtggtgt |
129 |
Q |
| |
|
||||||||| |||| |||||| |||| ||| ||||||||||||||||| |||| ||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
50945668 |
ctcttagctcattgaatccccttctgaaagatacactcaaactcaatattgatgatggtagctttttagaatagtttggttgtttaggtgttggtggtgt |
50945767 |
T |
|
| Q |
130 |
tgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---tt |
226 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |||||||||||| |||| || |||||||| |||||||||||||||||| ||||||||||||| || |
|
|
| T |
50945768 |
tgttcacaaccatgatggagattggatagctgatttttctcactatgaagctgaaggtgatgcgttattagctgagttacgcgctatccagataggtctt |
50945867 |
T |
|
| Q |
227 |
gatttttgtactaaaaaa---gattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgc |
323 |
Q |
| |
|
|||||||||| ||||||| || |||||||||| ||||||||| |||| |||||||||| | ||||||| |||||||||||| |||||||| |||| |
|
|
| T |
50945868 |
gatttttgtagtaaaaaaaaggactatgtcaacattatttgtgaaagtgattgtttggaaccgattgacctgattattgttggtcgtgatcatatgttgc |
50945967 |
T |
|
| Q |
324 |
acacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcat |
393 |
Q |
| |
|
||| ||| | ||| |||||| || |||||||||| |||||||| ||||| ||||| ||||||| ||||| |
|
|
| T |
50945968 |
aca-ttagattgctgacatcctccacattagagatgttttacatgaaaatgaaaatacaacattgatgcat |
50946037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 25969210 - 25969459
Alignment:
| Q |
19 |
cacactcatgacacctcttagcttattggatccc-cctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttagg |
117 |
Q |
| |
|
||||||||| | |||||||||| |||||||| | |||| |||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
25969210 |
cacactcattgcgcctcttagctcattggatctctcctccggaagg-acactcaaactcgatattaatggtagctttctagaagattttggttgtttagg |
25969308 |
T |
|
| Q |
118 |
tgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatc |
217 |
Q |
| |
|
|| || ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| | || | ||||| |||||| |||||||||| ||||| |
|
|
| T |
25969309 |
tggtgatggtgttgttcgcaatcacgatggagattggatagttggtttttctcactatgaagctcgaagccatgtgctattagttgagttacgtactatc |
25969408 |
T |
|
| Q |
218 |
cagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgt |
265 |
Q |
| |
|
||||||| |||||||||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
25969409 |
cagataggtcttgatttttgtagtaaaagaggttatgtcaacattatttgt |
25969459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 248 - 386
Target Start/End: Complemental strand, 27184961 - 27184817
Alignment:
| Q |
248 |
tatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctac-----tgtcat |
342 |
Q |
| |
|
||||| |||| ||||||||||| || ||||||||||||||||||| | ||||||| |||| |||||||||||||||||| |||||||| || ||| |
|
|
| T |
27184961 |
tatgtgaacattatttgtgagaatgattgtttggaagcagttgacttgattattgatggtcgtgatcataccttgcacacatatgctactgacatgacat |
27184862 |
T |
|
| Q |
343 |
ccttcatattagagatg-tttacatggaaatggaaatagaacatt |
386 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| |||| |||||| |
|
|
| T |
27184861 |
ccttcatattagagatgttttacatgaaaatggtaatacaacatt |
27184817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 358
Target Start/End: Original strand, 24015771 - 24016076
Alignment:
| Q |
55 |
tctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagattgg |
154 |
Q |
| |
|
|||||||||||| || || ||||| |||||||| ||| |||||| || || || |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24015771 |
tctggaaggtactcttgaattcaatgttgatggtaattttatagaaggcttcgggtgcttaggtgttggtggggttgttcgcaaccacgatggagattga |
24015870 |
T |
|
| Q |
155 |
atagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagat---agttgatttttgtactaaaaaagattatg |
251 |
Q |
| |
|
||||| | |||||| || |||||||||||||||| || || | |||||| |||| ||| | || ||||||||||| ||| | || |||| |
|
|
| T |
24015871 |
atagccgacttttcttcatatgaagttggaggtgatgcattgttggttgagttgcgtgttattgaaatgtgtcttgatttttgttgtaatagag-ttata |
24015969 |
T |
|
| Q |
252 |
tcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttcatat |
351 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||| | || ||| | ||| |||||||||||| |||||||||| || | |||| ||||||| |
|
|
| T |
24015970 |
acaacattatttgtgagagtgattctttggaagcagttgaaatctttgttgcttgttgtgatcataccttacacacttatgttattaacatcgttcatat |
24016069 |
T |
|
| Q |
352 |
tagagat |
358 |
Q |
| |
|
||||||| |
|
|
| T |
24016070 |
tagagat |
24016076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 25969739 - 25969829
Alignment:
| Q |
310 |
tgatcataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
|||||||||||| ||||||||||| | || | |||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
25969739 |
tgatcataccttacacacttatgccaatgacgtccttcatattagagatgttttacatggaaatgaaaatacaacattggtgcatgttctt |
25969829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 11371615 - 11371685
Alignment:
| Q |
330 |
atgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
|||| |||| |||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
11371615 |
atgcgactgacatcgttcatattagagattatttacatggaaatggaaatacaacattggtgcatgttctt |
11371685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 12562985 - 12563363
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttagg |
117 |
Q |
| |
|
|||||||||| || |||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
12562985 |
ccacactcatcacgcctcttagctcattgtatccccctcccgaaggtacactcaaactcaatattgatggtagatttctagaagatttttgttgtttagg |
12563084 |
T |
|
| Q |
118 |
tgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatc |
217 |
Q |
| |
|
|| |||| ||| |||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||| || | |||||||||||| |
|
|
| T |
12563085 |
tgatggtagtgctgtttgcaaccacgatggagattggatagctgg-ttttctcactatgaagctggaggtgatgcgttattatctaatttacgtgctatc |
12563183 |
T |
|
| Q |
218 |
cagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatc |
314 |
Q |
| |
|
||||||| |||||||||||| |||||||| || |||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
12563184 |
cagataggtcttgatttttgtagtaaaaaaggccatatcaacattatttgtgagagtgattgtttggaagtagttgacctgattattgttggtcgtgatc |
12563283 |
T |
|
| Q |
315 |
ataccttgcacacttatgctactgtcatccttcatattagaga-tgtttacatggaaatggaaatagaacattggtgcat |
393 |
Q |
| |
|
|||| ||| ||||||||||||| | ||||||||||| |||||| | |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
12563284 |
atactttgaacacttatgctaccgacatccttcataatagagattctttacatggaaatgaaaatacaacattggtgcat |
12563363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 15243184 - 15243569
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttagg |
117 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||| |||||| |||||| || || |||||||||||||||| |
|
|
| T |
15243184 |
ccacactcatcgcacctctcagctcattggatccccctccagaaggtacactcaaactcaatattgatggcagctttttaaaaaattttggttgtttagg |
15243283 |
T |
|
| Q |
118 |
tgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatc |
217 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
15243284 |
tgttggaggtgttgttctcaaccacgatggagattggataactggtttttcgcactatgaagttgaaggtgatgcgttattagccgagttacgtgctatc |
15243383 |
T |
|
| Q |
218 |
cagata---gttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatc |
314 |
Q |
| |
|
|||| || ||||||||| || ||||| ||||||||||| ||||||| |||||| |||||| |||| ||||||||| ||||||| |||| ||||| |
|
|
| T |
15243384 |
ttgatatgtcttaatttttgtagtagaaaaggttatgtcaacattatttgtaagagtgattgttttgaagtagttgacctgattattgatggtcatgatc |
15243483 |
T |
|
| Q |
315 |
ataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| | ||||||||||||| ||||| |
|
|
| T |
15243484 |
ataccttgcacacttatgctactcacatccttcatattagagatgttttacatgaaaatgaaaaaacaacattggtgcatgttctt |
15243569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 399
Target Start/End: Complemental strand, 1759025 - 1758653
Alignment:
| Q |
22 |
actcatgacacctcttagcttattggatccccct-ctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgt |
120 |
Q |
| |
|
|||||| || ||||||| || ||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1759025 |
actcatcacgcctcttaactcattggatcccccttctcgaaggtacactcaaactcaatattgatggtagctttctagaaggttttggttgtttaggtgc |
1758926 |
T |
|
| Q |
121 |
tggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccag |
220 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| | || |
|
|
| T |
1758925 |
tgatggtattgttcgcaaccacgatggagattggatagctggtttttctcactatgaagttggaggtgatgcgttattagctgagttactttaggtc--- |
1758829 |
T |
|
| Q |
221 |
atagttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcatacct |
320 |
Q |
| |
|
|||| ||||||| | |||||| || |||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| | ||| ||||||||||| |
|
|
| T |
1758828 |
----ttgaattttgtagtgaaaaaggttgtgtcaacattatttgtgagagtgattgtttggaagcaattgacctgattattgctagttgtgatcatacct |
1758733 |
T |
|
| Q |
321 |
tgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| ||||| |
|
|
| T |
1758732 |
tgcacacttatgccactaacatccttcatattagagatgatttacatgaaaatggaaatacaacattgatgcatgttctt |
1758653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 120 - 399
Target Start/End: Complemental strand, 28932545 - 28932262
Alignment:
| Q |
120 |
ttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatcca |
219 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |||| || || ||||| ||||||||||||||||||||||||| | |
|
|
| T |
28932545 |
ttggtgttgttgttcgtaaccacgatggagattggatagttggtttttctcactatgaagctgaagctgatgcgttattagctgagttacgtgctatcaa |
28932446 |
T |
|
| Q |
220 |
gatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcat |
316 |
Q |
| |
|
||||| ||| |||||||| | ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
28932445 |
gataggtcttggtttttgtagtgaaaaatgttatgtcaacattatttgtgagagtgattgtttggaagcagttgacctgattattgctggccgtgatcat |
28932346 |
T |
|
| Q |
317 |
accttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| ||||| | ||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
28932345 |
accttgcacacttatactactgacatccttcatattaaagatgctctacatggaagtggaaatacaacattggtgcatgttctt |
28932262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 130 - 393
Target Start/End: Original strand, 12607756 - 12608020
Alignment:
| Q |
130 |
tgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagata---gtt |
226 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| | |||||||||||||| |||||| || |
|
|
| T |
12607756 |
tgttcgtaaccacgatggagattggatagctggtttttctcattatgaagttggaaatgatgtgttattaaccgagttacgtgctatgcagatatgtctt |
12607855 |
T |
|
| Q |
227 |
gatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcaca |
326 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||||||| ||||| ||||||| |||| | |||||| |||||||| |
|
|
| T |
12607856 |
gatttttgtagtaaaaaag-ttatgtcaacattatttgt--gagtgattgtttggaagcagtagacctgattattgatggtcgtaatcatatcttgcaca |
12607952 |
T |
|
| Q |
327 |
cttatgctactgtcatccttcatattagagat-gtttacatggaaatggaaatagaacattggtgcat |
393 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12607953 |
cttatgctactgacatccttcatattagagatggtttacatggaaatggaaatacaacattggtgcat |
12608020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 59 - 279
Target Start/End: Original strand, 23589685 - 23589908
Alignment:
| Q |
59 |
gaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagattggatag |
158 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
23589685 |
gaaggtacactcaaactcaatattgatggcagctttctagaagattttggttgtttaggtgctggtggtgttgttcgtaactacgatagagattggataa |
23589784 |
T |
|
| Q |
159 |
ctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttgatttttgtactaaaaaagattatgtcaa |
255 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||| |||| ||||||||| |
|
|
| T |
23589785 |
ctgagttttcccactatgaagttggaggtgatgcgttattagctgagttacgtgctatccagatagaactttatttttgtagtaacaaaggttatgtcaa |
23589884 |
T |
|
| Q |
256 |
caatatttgtgagagtggttgttt |
279 |
Q |
| |
|
|| ||||||| |||||| |||||| |
|
|
| T |
23589885 |
cattatttgtcagagtgattgttt |
23589908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 103 - 279
Target Start/End: Original strand, 23810334 - 23810513
Alignment:
| Q |
103 |
ttttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagct |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||| ||| ||||| ||||| ||||||||||||| || ||| |||||| |
|
|
| T |
23810334 |
ttttggttgtttaggtgctggtggtgttgttcgtaactacgatagagattggataactgagttttcccactatgaagttggaggtggtgcgttgttagct |
23810433 |
T |
|
| Q |
203 |
gagttacgtgctatccagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgttt |
279 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||| |||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
23810434 |
gagttacgtgctatccagaaaggtcttgatttttgtagtaacaaaggttatgtcaacattatttgtgagagtgattgttt |
23810513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 117 - 362
Target Start/End: Complemental strand, 45261088 - 45260838
Alignment:
| Q |
117 |
gtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||||| |||||||||||| || | |||||| |
|
|
| T |
45261088 |
gtgttggtggtgttgttcgcaaccacgatgaagattggataactgatttttctcactatgaagttggaggtgatgcgttattagctgatttgcatgctat |
45260989 |
T |
|
| Q |
217 |
ccagatag---ttgatttttgtactaaaaaa-gattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttga |
312 |
Q |
| |
|
| |||| | |||||||||||| |||||| | | ||| ||||| ||||||||||||| ||| |||||| || || | || |||||| |||| ||| |
|
|
| T |
45260988 |
ctagatgggtcttgatttttgtaaaaaaaaaaggtcatgacaacattatttgtgagagtaattgcttggaatcatttaagctgattattcatggtcgtga |
45260889 |
T |
|
| Q |
313 |
tcataccttgcacacttatgctactgt-catccttcatattagagatgttt |
362 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
45260888 |
acatacattgcacacttatgctaccaaacattcttcatattagagatgttt |
45260838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 393
Target Start/End: Original strand, 36128080 - 36128192
Alignment:
| Q |
282 |
aagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagagat-gtttacatggaaatggaaatag |
380 |
Q |
| |
|
||||||||||| | |||||||||||| |||||||| ||| || ||||||| ||||| ||||||| ||||||||||| | ||||| ||||| ||||| |
|
|
| T |
36128080 |
aagcagttgacttgattattgttggtcgtgatcataacttacatacttatgttactgacatcctttatattagagatcctatacataaaaatgaaaatat |
36128179 |
T |
|
| Q |
381 |
aacattggtgcat |
393 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36128180 |
aacattggtgcat |
36128192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 4653384 - 4653751
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccc-tctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttag |
116 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||||| || | | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
4653384 |
ccacactcatcgcatctcttagctcattggatcccccctccgaagggtacactcaaactcaatattgatggtagctacctagaagattttggttgtttag |
4653483 |
T |
|
| Q |
117 |
gtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctat |
216 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| ||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
4653484 |
gtgctggtggtgttgttcgcaaccacgatggagattggatagctgatttttctcaccatgaagctggaggtgatgcgttactaggtgagttacgtgctat |
4653583 |
T |
|
| Q |
217 |
ccagatag---ttgatttttgtactaa-aaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttga |
312 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
4653584 |
ccagataggtcttgatttttgtagtaataaaaggctatgttaacattatttgtgagagtgattgtttggaagcagttgacctgattattgatggtcgtga |
4653683 |
T |
|
| Q |
313 |
tcataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaata |
379 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
4653684 |
tcataccttacacacttatgctactaacatctttcatattaaagatgctctacatggaaatggaaata |
4653751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 59 - 379
Target Start/End: Complemental strand, 8271506 - 8271181
Alignment:
| Q |
59 |
gaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagattggatag |
158 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8271506 |
gaaggtacattcaaactcaatattgatgatagctttctagaaggttttggttgcttaggtgctggtggtgttgttcgcaaccacgatggagattggatag |
8271407 |
T |
|
| Q |
159 |
ctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttga-tttttgtactaaaaaagattatgtca |
254 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||||||||||||||| | |||||| |||| |||| |||||||| | ||||| |||||||| |
|
|
| T |
8271406 |
ctggtttttctcattatgaagttggaggtgatgcgttattagctgagttacgcgttatccaaataggtcttgattttttgtagaagaaaaggttatgtca |
8271307 |
T |
|
| Q |
255 |
acaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttcatattag |
354 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
8271306 |
acattatttgtgagagtgattgtttggaagcagttgacctgattactgctggttgtgatcataccttgcacacttatgttactgacgtccttcatattag |
8271207 |
T |
|
| Q |
355 |
agatg-tttacatggaaatggaaata |
379 |
Q |
| |
|
||||| |||||||| ||||||||||| |
|
|
| T |
8271206 |
agatgctttacatgaaaatggaaata |
8271181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 399
Target Start/End: Original strand, 44440142 - 44440512
Alignment:
| Q |
33 |
ctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgt |
132 |
Q |
| |
|
||||| ||| ||||||| |||||| | |||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
44440142 |
ctctttgctcattggatacccctccgaaaggtagactcaaactcgatattgatggtagctttctagaagattttgattgtttaggtgatggtggcgttgt |
44440241 |
T |
|
| Q |
133 |
tcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagata---gttgat |
229 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||| ||||||| | ||||| ||||||||| |||||| ||| ||| |||||| ||||| |
|
|
| T |
44440242 |
tcgcaaccacgatggagattaggtagctggtttttctcactatgaagttgtatgtgatacgttattagcagagttatgtgttattcagatatgtcttgat |
44440341 |
T |
|
| Q |
230 |
ttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacactt |
329 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||| |||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
44440342 |
ttttgtagtaaaaaaggctatgtcaacattatttgtgagagtgattgtttggaagcagatgactcaattattgatggtcgtgatcataccttgcacactt |
44440441 |
T |
|
| Q |
330 |
atgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
44440442 |
atgctactaacatccttcatattagagatgttttacatgaaaatgaaaatacaacattggtgcatgttctt |
44440512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 51 - 379
Target Start/End: Complemental strand, 6571418 - 6571086
Alignment:
| Q |
51 |
cccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggaga |
150 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
6571418 |
cccctccggaaggtacactcaagctcaatattgatggtagctttctagaagactttggtagtttaggagatggtggtgttgttcgcaaccacgatggaga |
6571319 |
T |
|
| Q |
151 |
ttggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttgatttttgtactaaaaaagat |
247 |
Q |
| |
|
|||| | |||| |||||||||||| |||| ||||||||||| ||| |||||||||||| |||||||||| |||| ||||||||| || || ||||| |
|
|
| T |
6571318 |
ttgggtggctgatttttctcactatgaagctggaggtgatgcgttgttagctgagttatgtgctatccaaataggtcttgatttttatagtagaaaaggc |
6571219 |
T |
|
| Q |
248 |
tatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttc |
347 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||| |||||||||| ||||||| |||| |||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
6571218 |
tatgtcaacattatttgtgagggtgattgttcggaaacagttgacctgattattgctggtcgtgatcataacttacacacttatgctactgacatccttc |
6571119 |
T |
|
| Q |
348 |
atattagagatg-tttacatggaaatggaaata |
379 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||| |
|
|
| T |
6571118 |
atattagagatgctttgcatggaaatagaaata |
6571086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 82 - 370
Target Start/End: Original strand, 37192774 - 37193067
Alignment:
| Q |
82 |
tgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagtt |
181 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| || |
|
|
| T |
37192774 |
tgatggtagttttctggaagatttgagttgtttaggtgttggtggtgttgttcgcaaccacgatggtgattggataactaatttttctcactatgaaatt |
37192873 |
T |
|
| Q |
182 |
ggaggtgatgtgttattagctgagttacgtgctatccagata---gttgatttttgtact-aaaaaagattatgtcaacaatatttgtgagagtggttgt |
277 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||||||||| |||||||||||| | |||| | || |||||||| ||||| ||| |||| |||| |
|
|
| T |
37192874 |
ggaggtgatacgttattaactgagttacgtgatatccagataagttttgatttttgtagtctaaaaggtttgtgtcaacattatttttgaaagtgattgt |
37192973 |
T |
|
| Q |
278 |
ttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaa |
370 |
Q |
| |
|
|||||| ||||| |||| ||||||| |||| |||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
37192974 |
ttggaaacagttaacctgattattgatggtcgtgatcatatcttgcacatttatgctacttacatccttcatattagagatgttttacatggaa |
37193067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 194 - 399
Target Start/End: Complemental strand, 45036299 - 45036090
Alignment:
| Q |
194 |
ttattagctgagttacgtgctatccagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttg |
290 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
45036299 |
ttattaactgagttacgtgctatccaggtaggtcttgatttttgtagtaaaaaaggttatgtcaacattatttgtgagagtgattgtttggaagcagttg |
45036200 |
T |
|
| Q |
291 |
accttattattgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggt |
389 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||| || |
|
|
| T |
45036199 |
acctgattattgatggtgatgatcataccttgcacacttatgctactgacatccttcatattagagatgttttacatgaaaatgaaaatacaacattagt |
45036100 |
T |
|
| Q |
390 |
gcatattctt |
399 |
Q |
| |
|
|||| ||||| |
|
|
| T |
45036099 |
gcatgttctt |
45036090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 5964507 - 5964399
Alignment:
| Q |
34 |
tcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgtt |
133 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||| || |||| |||||||||||||||| |
|
|
| T |
5964507 |
tcttagctcattggatccccctctggaaggtacactcaaacacaatattaatggtagctttctagaagattgtggctgcttagatgttggtggtgttgtt |
5964408 |
T |
|
| Q |
134 |
cgcaaccac |
142 |
Q |
| |
|
|||| |||| |
|
|
| T |
5964407 |
cgcatccac |
5964399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 353
Target Start/End: Complemental strand, 45041926 - 45041836
Alignment:
| Q |
263 |
tgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttcatatta |
353 |
Q |
| |
|
|||||||||| |||||| |||||||||| | ||||||| |||| |||||||| |||||||||||||| || || ||| ||| |||||| |
|
|
| T |
45041926 |
tgtgagagtgattgtttaaaagcagttgatttaattattgatggtaatgatcatatcttgcacacttatgttattgacattctttatatta |
45041836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 393
Target Start/End: Complemental strand, 55173 - 54804
Alignment:
| Q |
32 |
cctcttagcttattggatccccctc----tggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggt |
127 |
Q |
| |
|
|||||||||| |||||||||||| | |||||| |||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55173 |
cctcttagctcattggatcccccaccccctggaagatacacttaaactcaatattgatggtagttttctagaagatttgggttgtttaggtgttggtggt |
55074 |
T |
|
| Q |
128 |
gttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag--- |
224 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
55073 |
gttgtttgcaatcacgatggagattggatagctggtttttctcactatgaagctggaggtgatttgttattagctgagttacgtgttattcagataggtc |
54974 |
T |
|
| Q |
225 |
ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgca |
324 |
Q |
| |
|
|||||||||||| | |||| ||||| |||| |||||||||||||| ||||||||||| || |||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
54973 |
ttgatttttgtagtctgaaaggctatgtgaacattatttgtgagagtgattgtttggaagtaggtgacctgattattgatggtcgtgatcataccttgca |
54874 |
T |
|
| Q |
325 |
cacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcat |
393 |
Q |
| |
|
|| ||||| | ||| |||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
54873 |
catttatgttgctgacatccttcatattagagatgttttacatggaaatggtaatacaacattgttgcat |
54804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 29046955 - 29047322
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttagg |
117 |
Q |
| |
|
|||||||||| || |||||||||| ||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29046955 |
ccacactcatcacgcctcttagctcatttgatcccccc--ggaaggtacacttaaactcaatattgatggtagctttctagaagattttggttgtttaga |
29047052 |
T |
|
| Q |
118 |
tgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatc |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
29047053 |
tgttggtggtgttgtttgcaaccacgatggagattgaatagctagtttttctcactatgaatctggaggtgatgcgttattagctgagttacgtgctaac |
29047152 |
T |
|
| Q |
218 |
cagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatc |
314 |
Q |
| |
|
|||| || |||||||||||| | ||| ||| || |||||| ||||| ||| |||| ||||||| ||||||||||| ||| || |||| ||||| |
|
|
| T |
29047153 |
cagacaggtcttgatttttgtaatcaaagagactacatcaacattatttatgaaagtgattgtttg---gcagttgacctgcttactgatggtcgtgatc |
29047249 |
T |
|
| Q |
315 |
ataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacatt |
386 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
29047250 |
ataccttgcacatttatgctactaacatccttcatattagagatgctttacatggaaatggtaataaaacatt |
29047322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 2442177 - 2442384
Alignment:
| Q |
32 |
cctcttagcttattggatccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttg |
131 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||| || |||||||||| ||||||||| ||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
2442177 |
cctcttagctcattagatccccctccggaaggtactcttaaactcaatattgatggtagtttttttagagatttgggttgtttaggtgttggtggtgttg |
2442276 |
T |
|
| Q |
132 |
ttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagata---gttga |
228 |
Q |
| |
|
| | ||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
2442277 |
tccacaaccacaatggagactggatagctagtttttctcactatgaagttggaggtgatgcgttattagctgagttacgtgttatccaaataggtgttga |
2442376 |
T |
|
| Q |
229 |
tttttgta |
236 |
Q |
| |
|
|||||||| |
|
|
| T |
2442377 |
tttttgta |
2442384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 203 - 372
Target Start/End: Complemental strand, 10993104 - 10992931
Alignment:
| Q |
203 |
gagttacgtgctatccagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttatta |
299 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| |||||| | ||||||||| | |||||||||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
10993104 |
gagttacgtgctatctagataggtcttgatttttgtagtaaaaatggttatgtcaatattatttgtgagagtgattgtttgaaagcagttgacctgatta |
10993005 |
T |
|
| Q |
300 |
ttgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaat |
372 |
Q |
| |
|
| | | || ||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
10993004 |
tggatagtcgtgatcataccttgcacacttatgctactgacatctttcatgttagagatgttttacatggaaat |
10992931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 248 - 386
Target Start/End: Original strand, 2443249 - 2443393
Alignment:
| Q |
248 |
tatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctac-----tgtcat |
342 |
Q |
| |
|
||||| |||| ||||||||||| || ||||||||||||||||||| | ||||||| |||| |||||||||||||||||| |||||||| || ||| |
|
|
| T |
2443249 |
tatgtgaacattatttgtgagaatgattgtttggaagcagttgacttgattattgatggtcgtgatcataccttgcacacatatgctactgacatgacat |
2443348 |
T |
|
| Q |
343 |
ccttcatattagagatg-tttacatggaaatggaaatagaacatt |
386 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| |||| |||||| |
|
|
| T |
2443349 |
ccttcatattagagatgttttacatgaaaatggtaatacaacatt |
2443393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 6861944 - 6862021
Alignment:
| Q |
225 |
ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattg |
302 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||| ||||||| ||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
6861944 |
ttgatttttgtagtaaaaatggttatgtcaacattatttgtaagagtagttgtttggaagtagttgacctgattattg |
6862021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 43445167 - 43445529
Alignment:
| Q |
18 |
ccacactcatgacacctcttagcttattggatccccc--tctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgttta |
115 |
Q |
| |
|
|||||||||| || || |||||| |||| ||||||| || | ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
43445167 |
ccacactcatcacgtcttttagctcattgaatccccccatccgaaaggtacactcaaactcaatattgatggtaagtttctagaagattttggttgttta |
43445266 |
T |
|
| Q |
116 |
ggtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgcta |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||| ||| ||||| |||||| |||||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
43445267 |
ggtgttggtggtgtagttcgcaaccacgatggaaattggatatctgttttttatcactatgaagttggaggtgatgcgttattatctgagttacgtacta |
43445366 |
T |
|
| Q |
216 |
tccagata---gttgatttttgtact--aaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggtttt |
310 |
Q |
| |
|
|||| ||| ||||||||| || | |||||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| | |
|
|
| T |
43445367 |
tccatatatgtcttgatttttatagtaaaaaaaaaactatgtcaacattatttgtgagagtaattgtttggaagcagttgaccttattattgtcggtcgt |
43445466 |
T |
|
| Q |
311 |
gatcataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaat |
372 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
43445467 |
gatcataccttgcacacttatgctattgatatccttcatattatagatgatttacatagaaat |
43445529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 50 - 349
Target Start/End: Complemental strand, 53590442 - 53590140
Alignment:
| Q |
50 |
ccccctctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggag |
149 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||||| |||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53590442 |
ccccctccgaaaggtacactcaaactcaatattgatggtagttttctacaagattttggttgcttaggttgtggtggtgttgttcgcaaccacgatggag |
53590343 |
T |
|
| Q |
150 |
attggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagata---gttgatttttgtactaaaaaaga |
246 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| || ||||| |||||||||| | ||||||||| |
|
|
| T |
53590342 |
atttgatagctggtttttctcactataaagttggaggtgatgtgttatcagctgagttatgtgataaaaagataagctttgatttttgcagtaaaaaaga |
53590243 |
T |
|
| Q |
247 |
ttatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatcctt |
346 |
Q |
| |
|
| |||||||| |||||||||||||| |||||| |||| ||||||| | ||||| ||||| ||||||||||||||||| |||||||| || ||| ||| |
|
|
| T |
53590242 |
ctttgtcaacattatttgtgagagtgattgtttcgaaggagttgacatggttattattggtcgtgatcataccttgcacatttatgctattgacattctt |
53590143 |
T |
|
| Q |
347 |
cat |
349 |
Q |
| |
|
||| |
|
|
| T |
53590142 |
cat |
53590140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 101 - 393
Target Start/End: Complemental strand, 7320512 - 7320218
Alignment:
| Q |
101 |
gattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
7320512 |
gattttggttgtttaggtgttggtggtgttgttcgcaaccacgatggagactggataactggtttttctcactatgaagctggaggtgatgcgttattag |
7320413 |
T |
|
| Q |
201 |
ctgagttacgtgctatccagatag---ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttat |
297 |
Q |
| |
|
|||| |||||||||||||||| || |||||||||||| ||||| || |||||||| |||| ||||||||| ||||||||||| | | ||| | || |
|
|
| T |
7320412 |
ctgaattacgtgctatccagacaggtcttgatttttgtagtaaaag-gacattgtcaacattattagtgagagtgattgtttggaagaactagacttgat |
7320314 |
T |
|
| Q |
298 |
tattgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcat |
393 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||| || |||||||||| |
|
|
| T |
7320313 |
tattgttggcgt-gatcatacattgcacacttatgctatcgacatccttcatattagagttgctttacatggaaatggaaatacaatattggtgcat |
7320218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 225 - 399
Target Start/End: Original strand, 17508629 - 17508804
Alignment:
| Q |
225 |
ttgatttttgtactaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgca |
324 |
Q |
| |
|
|||||||||||| | |||| || ||||| ||| |||||||||||||| ||||||||||||||||||| | ||||||| |||| ||||||||| ||||| |
|
|
| T |
17508629 |
ttgatttttgtagtttaaaaaatcatgtctacattatttgtgagagtgcttgtttggaagcagttgacttgattattgatggtcgtgatcatacgttgca |
17508728 |
T |
|
| Q |
325 |
cacttatgctactgtcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| ||| || |||| ||||||||||||| ||||| |
|
|
| T |
17508729 |
tacttatgctactgacatccttcatattagagatgttttacatgaaaacggtaatacaacattggtgcatgttctt |
17508804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 259 - 396
Target Start/End: Original strand, 50425920 - 50426058
Alignment:
| Q |
259 |
tatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagagat |
358 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| ||||||| || | ||||||||||||| ||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
50425920 |
tatttgtaagagtgattgtttggaagcagttgacctgattattgctgatcgtgatcataccttgtacacttatgtcactgacatccttcatactagagat |
50426019 |
T |
|
| Q |
359 |
g-tttacatggaaatggaaatagaacattggtgcatatt |
396 |
Q |
| |
|
| |||||| ||||||| ||||| |||||| ||||||||| |
|
|
| T |
50426020 |
gatttacacggaaatgaaaatacaacatttgtgcatatt |
50426058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 399
Target Start/End: Complemental strand, 33460292 - 33460178
Alignment:
| Q |
287 |
gttgaccttattattgttggttttgatcataccttgcacacttatgctactgtcatcc-ttcatattagagatg-tttacatggaaatggaaatagaaca |
384 |
Q |
| |
|
|||||||| ||| |||||| | |||||||||||||||||||||| ||||| ||||| || |||||||||||| || |||||||||||| || | ||| |
|
|
| T |
33460292 |
gttgacctgattgttgttgatcgtgatcataccttgcacacttatactactaacatccttttatattagagatgcttcacatggaaatggtaacactaca |
33460193 |
T |
|
| Q |
385 |
ttggtgcatattctt |
399 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
33460192 |
ttggtgaatgttctt |
33460178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 51160851 - 51160913
Alignment:
| Q |
300 |
ttgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagagatgttt |
362 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||| | |||| ||||||||||||||||||||||| |
|
|
| T |
51160851 |
ttgttggttgtgatcatacagtgcacacatataccactgacatccttcatattagagatgttt |
51160913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 33460500 - 33460447
Alignment:
| Q |
137 |
aaccacgatggagattggatagctggtttttctcactacgaagttggaggtgat |
190 |
Q |
| |
|
|||||| ||||||||| ||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
33460500 |
aaccacaatggagattagatggctggcttttctcactatgaagttggaggtgat |
33460447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 33 - 362
Target Start/End: Complemental strand, 12292347 - 12292014
Alignment:
| Q |
33 |
ctcttagcttattggatccccc-tctggaaggtacactcaaactcaatagtgatggtagctttctagaagattttggttgtttaggtgttggtggtgttg |
131 |
Q |
| |
|
|||||||||||||||||||||| || ||| || |||||||||||||| | ||| ||||||||||||||| |||| || ||||||| |||| ||||| |
|
|
| T |
12292347 |
ctcttagcttattggatcccccctccaaaagataaactcaaactcaatattaatgatagctttctagaagactttgagtgcttaggtgccggtgatgttg |
12292248 |
T |
|
| Q |
132 |
ttcgcaaccacgatggagattggatagctggtttttctcactacgaagttggaggtgatgtgttattagctgagttacgtgctatccagatag---ttga |
228 |
Q |
| |
|
|| ||||| | |||||||||| |||| || |||||||||| | ||| |||||||||||||||||||| ||||||| ||| |||||||||||| |||| |
|
|
| T |
12292247 |
tttgcaacaa-gatggagattagatatttgatttttctcaccatgaatttggaggtgatgtgttattaactgagttgcgtactatccagatagggcttga |
12292149 |
T |
|
| Q |
229 |
tttttgta-ctaaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacac |
327 |
Q |
| |
|
||||||| | ||||||| |||| |||| |||||||||||||| ||| |||||||||||||| || ||||||||||| ||||||| | |||||||| |
|
|
| T |
12292148 |
tttttgtttcaaaaaaaggctatgataacattatttgtgagagtgattgcttggaagcagttgagctgattattgttggccgtgatcatgcattgcacac |
12292049 |
T |
|
| Q |
328 |
ttatgctactgtcatccttcatattagagatgttt |
362 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |
|
|
| T |
12292048 |
ttatgctagtgagatccttcatattagagatgttt |
12292014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 239 - 399
Target Start/End: Complemental strand, 12291988 - 12291827
Alignment:
| Q |
239 |
aaaaaagattatgtcaacaatatttgtgagagtggttgtttggaagcagttgaccttattattgttggttttgatcataccttgcacacttatgctactg |
338 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||| ||| |||||||||||||| || ||||| ||||| ||||||| | |||||||||||||||| | |
|
|
| T |
12291988 |
aaaaaaggctatgacaacattatttgtgagagtgattgcttggaagcagttgagctgattatcgttggccgtgatcatgcattgcacacttatgctagcg |
12291889 |
T |
|
| Q |
339 |
tcatccttcatattagagatg-tttacatggaaatggaaatagaacattggtgcatattctt |
399 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| ||| ||||||||| || ||||| |
|
|
| T |
12291888 |
agatccttcatattagagatgttttacatgaaaatggcaatgctacattggtgtatgttctt |
12291827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 19564 - 19501
Alignment:
| Q |
297 |
ttattgttggttttgatcataccttgcacacttatgctactgtcatccttcatattagagatgtt |
361 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |||||| |||| |||| |||||| |||||||||| |
|
|
| T |
19564 |
ttattgatggttgtgatcataccttgcacgcttatgttactaacatctttcata-tagagatgtt |
19501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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