View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14786_low_4 (Length: 381)
Name: NF14786_low_4
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14786_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 52373291 - 52373643
Alignment:
| Q |
13 |
agcagagaattgtacctttgtttcaactgcatggagatatgacgaagaaacttttccaactcataaaaagcttttgccagttgcaaggcttgaggaacaa |
112 |
Q |
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| T |
52373291 |
agcagagaattgtacctttgtttcaactgcatggagatatgacgaagaaacttttccaactcataaaaagcttttgccagttgcaaggcttgaggaacaa |
52373390 |
T |
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| Q |
113 |
gaagacatggacatcatggttgttaatgaagaaacacttgaagctgttgaagatggtgttgaaggagaaatttgggtttcatctccaagtaatgcctctg |
212 |
Q |
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| T |
52373391 |
gaagacatggacatcatggttgttaatgaagaaacacttgaagctgttgaagatggtgttgaaggagaaatttgggtttcatctccaagtaatgcctctg |
52373490 |
T |
|
| Q |
213 |
gttaccttggtcacccttctttaacaagagaagtttttcatgcaagaatcagaaacacagttcgtaagtgttttcttcgaacgggtgacaaaggaatcgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373491 |
gttaccttggtcacccttctttaacaagagaagtttttcatgcaagaatcagaaacacagttcgtaagtgttttcttcgaacgggtgacaaaggaatcgt |
52373590 |
T |
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| Q |
313 |
aaaaggagaaaacaggtatctctttgttactggtagaattcaagatactatac |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373591 |
aaaaggagaaaacaggtatctctttgttactggtagaattcaagatactatac |
52373643 |
T |
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