View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14786_low_5 (Length: 363)

Name: NF14786_low_5
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14786_low_5
NF14786_low_5
[»] chr5 (12 HSPs)
chr5 (1-223)||(30747744-30747966)
chr5 (100-223)||(30481548-30481671)
chr5 (281-345)||(30340196-30340260)
chr5 (281-345)||(30481726-30481790)
chr5 (281-345)||(30748025-30748089)
chr5 (20-72)||(30244370-30244422)
chr5 (1-72)||(30398493-30398568)
chr5 (68-211)||(29870405-29870539)
chr5 (64-130)||(30244267-30244333)
chr5 (1-45)||(30679218-30679262)
chr5 (68-131)||(29851514-29851577)
chr5 (283-315)||(29870580-29870612)
[»] chr4 (1 HSPs)
chr4 (283-315)||(20298402-20298434)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30747744 - 30747966
Alignment:
Q  1 taaacaatctaaaacaaagaaataaagaagaccaacaaaaacttataaaaatggaatagaccttgattatcaaaatcgcaatcctcgataccactactgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30747744 taaacaatctaaaacaaagaaataaagaagaccaacaaaaacttataaaaatggaatagaccttgattatcaaaatcgcaatcctcgataccactactgg 30747843  T
Q  101 acccattgtcgcttcctccactctaaaagacttcgtcttcgtgattgggtatgtttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30747844 acccattgtcgcttcctccactctaaaagacttcgtcttcgtcattgggtatgtttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatcc 30747943  T
Q  201 taaccattcaattaaatccccac 223  Q
    |||||||||||||||||||||||    
T  30747944 taaccattcaattaaatccccac 30747966  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 30481548 - 30481671
Alignment:
Q  100 gacccattgtcgcttcctccactctaaaagacttcgtcttcgtgattgggtatgtttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatc 199  Q
    ||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||    
T  30481548 gacccattgtcacttcctccactccaaaagactgcgtcttcgtcattgggtatgtttgttccattaatcccgttatttgtcttgtgtgtcgacgccaatc 30481647  T
Q  200 ctaaccattcaattaaatccccac 223  Q
    ||||||||||||||||||||||||    
T  30481648 ctaaccattcaattaaatccccac 30481671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 30340260 - 30340196
Alignment:
Q  281 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatcttt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340260 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatcttt 30340196  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 30481726 - 30481790
Alignment:
Q  281 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatcttt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30481726 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatcttt 30481790  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 30748025 - 30748089
Alignment:
Q  281 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatcttt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748025 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatcttt 30748089  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 30244422 - 30244370
Alignment:
Q  20 aaataaagaagaccaacaaaaacttataaaaatggaatagaccttgattatca 72  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30244422 aaataaagaagaccaacaaaaacttataaaaatggaataaaccttgatgatca 30244370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 30398493 - 30398568
Alignment:
Q  1 taaacaatctaaaacaaagaaataaagaagaccaacaaaaactt----ataaaaatggaatagaccttgattatca 72  Q
    |||||||||||||||||| ||||||| |||||||||||||||||    ||||||||||| || |||||||| ||||    
T  30398493 taaacaatctaaaacaaataaataaaaaagaccaacaaaaacttaagaataaaaatggagtaaaccttgatgatca 30398568  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 29870405 - 29870539
Alignment:
Q  68 tatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagacttcgtcttcgtgattgggtatgtttgtt-ccattaa 166  Q
    ||||||||||||||||||||||||||| || |||| | ||||| | |||||||||| ||||||| |  ||||| | ||| |||| ||||||| |  ||||    
T  29870405 tatcaaaatcgcaatcctcgataccaccaccggactcgttgtcacctcctccactccaaaagacgttctcttcatcattaggtacgtttgttacggttaa 29870504  T
Q  167 tcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaa 211  Q
    |||          ||||||||||||||||||||||||||||||||    
T  29870505 tcc----------cttgtgtgttgaaggcaatcctaaccattcaa 29870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 30244333 - 30244267
Alignment:
Q  64 tgattatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaaga 130  Q
    |||| ||||||||||||||||||||| |||| ||||||| | ||||| | |||||||||| ||||||    
T  30244333 tgataatcaaaatcgcaatcctcgatgccacgactggactcgttgtcacctcctccactccaaaaga 30244267  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30679262 - 30679218
Alignment:
Q  1 taaacaatctaaaacaaagaaataaagaagaccaacaaaaactta 45  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||    
T  30679262 taaacagtctaaaacaaataaataaaaaagaccaacaaaaactta 30679218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 29851514 - 29851577
Alignment:
Q  68 tatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagac 131  Q
    ||||||||||||||||||||||||||| || ||||  ||||||   |||||||||| |||||||    
T  29851514 tatcaaaatcgcaatcctcgataccaccaccggacttattgtcatctcctccactccaaaagac 29851577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 29870580 - 29870612
Alignment:
Q  283 atgatgaagaaaatgacctgaattagaacattt 315  Q
    |||||||||||||| ||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaacattt 29870612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 20298434 - 20298402
Alignment:
Q  283 atgatgaagaaaatgacctgaattagaacattt 315  Q
    |||||||||||||| ||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaacattt 20298402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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