View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14786_low_6 (Length: 359)
Name: NF14786_low_6
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14786_low_6 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 184 - 359
Target Start/End: Complemental strand, 52051549 - 52051374
Alignment:
| Q |
184 |
tactagaattagaataggtatatttatttgagggaccatagtgttacagaatcttctgtacatggatatgaactaatggttgtgattacagtggtggtgc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52051549 |
tactagaattagaataggtatatttatttgagggaccatagtgttacagaatcttctgtacatggatatgaactaatggttgtgattacagtggtggtgc |
52051450 |
T |
|
| Q |
284 |
atgccaatgctatttttctctttctattttctctctgaactcttattattatgactgcacctcttctgctgcatct |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52051449 |
atgccaatgctatttttctctttctattttctctctgaactcttattattatgactgcacctcttctgctgcatct |
52051374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 52051712 - 52051616
Alignment:
| Q |
21 |
atttgtagataagagcttgatgttcaagctcttgccactgagttggagtaaaaggatacctgtttcttccattcatcattgttgttttgttatgagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52051712 |
atttgtagataagagcttgatgttcaagctcttgccactgagttggagtaaaaggatacctgtttcttccattcatcattgttgttttgttatgagc |
52051616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 18200190 - 18200243
Alignment:
| Q |
23 |
ttgtagataagagcttgatgttcaagctcttgccactgagttggagtaaaagga |
76 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || | |||||||||||| |
|
|
| T |
18200190 |
ttgtaaataagagcttgatgttcaagttcttgccattgtgaaggagtaaaagga |
18200243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University