View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14786_low_7 (Length: 352)
Name: NF14786_low_7
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14786_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 164 - 336
Target Start/End: Complemental strand, 37341652 - 37341480
Alignment:
| Q |
164 |
atatgcttcttattggttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattg |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37341652 |
atatgcttcttattggttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattg |
37341553 |
T |
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| Q |
264 |
cttaacatgcttataaatttaaaacaatttgatttccttacttcatttgcaggctattttgacaagttgtaaa |
336 |
Q |
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| T |
37341552 |
cttaacatgcttataaatttaaaacaatttgatttccttacttcatttgcaagctattttgacaagttgtaaa |
37341480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 8922626 - 8922765
Alignment:
| Q |
176 |
ttggttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattgcttaacatgctt |
275 |
Q |
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|||||| ||||||||| | |||| | ||||||||||||||||| | |||||| |||| ||||||||| | |||||| |||||||||||||||||||||| |
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| T |
8922626 |
ttggttctttgttttatactttttccgttcaagaatatgattccatccatcaataaattaatatgaagcattgtttgacctttaattgcttaacatgctc |
8922725 |
T |
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| Q |
276 |
ataaatttaaaacaatttgatttccttacttcatttgcag |
315 |
Q |
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| T |
8922726 |
ataaatttaaagcattttgattgcctcattttatttgcag |
8922765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 164 - 336
Target Start/End: Complemental strand, 25890089 - 25889917
Alignment:
| Q |
164 |
atatgcttcttattggttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattg |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25890089 |
atatgcttcttattggttatttgttttacatttttccggttaaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattg |
25889990 |
T |
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| Q |
264 |
cttaacatgcttataaatttaaaacaatttgatttccttacttcatttgcaggctattttgacaagttgtaaa |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25889989 |
cttaacatgcttataaatttaaaacaatttgatttccttacttcatttgcaagctattttgacaagttgtaaa |
25889917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 29156074 - 29156163
Alignment:
| Q |
179 |
gttatttgttttacatttttccggttcaagaatatgattcaacccatcactaaactaatatgaatctttgttttacctttaattgcttaac |
269 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| || |||||| |||| |||| |||| |
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| T |
29156074 |
gttatttgttttacatttttctggttcaagaatatgattcaattcaccactaaactaatatgaatcatt-ttttacatttatttgcataac |
29156163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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