View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14786_low_9 (Length: 321)
Name: NF14786_low_9
Description: NF14786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14786_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 34030025 - 34029719
Alignment:
| Q |
15 |
atgaaattgttaactatagtattttataacatttttaatatttaattttaaagaaaagttagactgacaatgagagttgggtgttacaacaataagttat |
114 |
Q |
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| T |
34030025 |
atgaaattgttaactatagtattttatgacatttttaatatttaattttaaagaaaagttagactgacaatgagagttgggtgttacaacaataaatgat |
34029926 |
T |
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| Q |
115 |
gtcacttccacataaatttggagaaaaattgaaagagatctactaaatcacgacaaagaaaaaacatgaggatcaaaatcgctaaaaatgttggatgcca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34029925 |
gtcacttccacataaatttggagaaaaattgaaagaggtctactaaatcacgacaaagaaaaaacatgaggatcaaaatcgctaaaaatgttggatgcca |
34029826 |
T |
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| Q |
215 |
aaaccgcacaatcacaagcaatacttggaggatgaaaagtgcaatgtctaaatttataaatgagttatgtatgtgcagtatgacattcctttaggattta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34029825 |
aaaccgcacaatcacaagcaatacttggaggatgaaaagtgcaatgtctaaatttataaatgagttatgtatgtgcagtatgacattcctttaggattta |
34029726 |
T |
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| Q |
315 |
actaata |
321 |
Q |
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||||||| |
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| T |
34029725 |
actaata |
34029719 |
T |
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