View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14787_high_4 (Length: 347)
Name: NF14787_high_4
Description: NF14787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14787_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 333
Target Start/End: Original strand, 24774005 - 24774323
Alignment:
| Q |
15 |
aaagggcaaacatggtgtgtggcgaacggtggttattccgaggagaagttgaaacacgcgcttgattatgcgtgtggagaaggtggagctgattgtgctc |
114 |
Q |
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| T |
24774005 |
aaagggcaaacatggtgtgtggcgaatggtggttattccgaggagaagttgaaacacgcgcttgattatgcgtgtggagaaggtggagccgattgtgcac |
24774104 |
T |
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| Q |
115 |
cgattcaacccggtgccacgtgttacaatcctaatactttagaggcacatgcttcctttgctttcaatagttactatcagaaaaagtcacgtgggggtgg |
214 |
Q |
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| T |
24774105 |
cgattcaacctggtgccacgtgttacaatcctaatactttggaggcacatgcttcctttgctttcaatagttactatcagaaaaagtcacgtgggggtgg |
24774204 |
T |
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| Q |
215 |
cacatgtgattttggtggtgctgcttatgttgttacacaagctcctagtaagcccttactttctttgcaattttatttgtcttaaattcataaaaattgc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24774205 |
cacatgtgattttggtggtgctgcttatgttgttacacaagctcctagtaagtccttactttctttgcaattttatttgtcttaaattcataaaaattgc |
24774304 |
T |
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| Q |
315 |
aatttgcatgagtgaaaag |
333 |
Q |
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| T |
24774305 |
aatttgcatgagtgaaaag |
24774323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 36985645 - 36985526
Alignment:
| Q |
78 |
gattatgcgtgtggagaaggtggagctgattgtgctccgattcaacccggtgccacgtgttacaatcctaatactttagaggcacatgcttcctttgctt |
177 |
Q |
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|||| ||| ||||| || ||||| |||||||| |||||||||| | ||||||||||| | |||||||||| || | || |||||||| ||||| | |
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| T |
36985645 |
gattttgcttgtggtgagggtggtgctgattgccgtccgattcaaaacaatgccacgtgtttcgatcctaatacattggttgcccatgcttcatttgcgt |
36985546 |
T |
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| Q |
178 |
tcaatagttactatcagaaa |
197 |
Q |
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| T |
36985545 |
tcaatagttattatcagaaa |
36985526 |
T |
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