View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14787_low_1 (Length: 663)

Name: NF14787_low_1
Description: NF14787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14787_low_1
NF14787_low_1
[»] chr3 (10 HSPs)
chr3 (424-630)||(32836501-32836702)
chr3 (15-225)||(32836956-32837166)
chr3 (230-359)||(32836780-32836909)
chr3 (440-490)||(45441713-45441763)
chr3 (258-339)||(9176821-9176902)
chr3 (203-252)||(32826174-32826223)
chr3 (287-359)||(37341420-37341492)
chr3 (280-339)||(32847647-32847706)
chr3 (285-335)||(26749037-26749086)
chr3 (289-341)||(13826028-13826079)
[»] chr6 (3 HSPs)
chr6 (280-339)||(17930201-17930260)
chr6 (287-339)||(5107148-5107200)
chr6 (302-354)||(10788583-10788635)
[»] chr7 (3 HSPs)
chr7 (288-359)||(22519156-22519227)
chr7 (288-359)||(31457366-31457437)
chr7 (288-338)||(36298898-36298948)
[»] chr8 (2 HSPs)
chr8 (288-341)||(31006127-31006180)
chr8 (288-354)||(6870586-6870652)
[»] chr5 (1 HSPs)
chr5 (288-337)||(2209654-2209703)
[»] chr4 (4 HSPs)
chr4 (290-341)||(42555433-42555484)
chr4 (288-335)||(40714808-40714855)
chr4 (297-359)||(17120273-17120335)
chr4 (288-338)||(51357292-51357342)
[»] chr1 (1 HSPs)
chr1 (289-341)||(38264311-38264363)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 3e-96; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 424 - 630
Target Start/End: Complemental strand, 32836702 - 32836501
Alignment:
Q  424 ttaatgagatattgatgtcctttttcgacctgaagttggtagtgcttgcatttgtagggtgatataattcagtgtcaatgtcaaagtatatttatgttct 523  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32836702 ttaatgagatattgatgtcctttttcgaccagaagttggtagtgcttgcatttgtagggtgatataattcagtgtcaatgtcaaagtatatttatgttct 32836603  T
Q  524 tgaatatctcatgtcattctttactagaattctgcatgttgctgcgatggtcgtacacttctgttctgtccacagaatatgtgcaaccttcactgtttta 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     |||||||||||||||||||||||||||||||||||    
T  32836602 tgaatatctcatgtcattctttactagaattctgcatgttgctgcgatggtggtacactt-----ctgtccacagaatatgtgcaaccttcactgtttta 32836508  T
Q  624 gtataac 630  Q
    |||||||    
T  32836507 gtataac 32836501  T

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Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 32837166 - 32836956
Alignment:
Q  15 aataataatcacaatctaacgtccttacaattnnnnnnngtcaagcgttcttaattggattaacctgtatacctcttccaacggaaggttatatgatcgg 114  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  32837166 aataataatcacaatctaacgtccttacaattaaaaaaagtcaagcgttcttaattggattaacctgtatacctcttccaacggcaggttatatgatcga 32837067  T
Q  115 ttctatgccaatggttttataccaagtctttgccaatacaaatgtacaatagacatttttgtaacaaaagttgatgtttgagttggacaaaacaattttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32837066 ttctatgccaatggttttataccaagtctttgccaatacaaatgtacacaagacatttttgtaacaaaagttgatgtttgagttggacaaaacaattttt 32836967  T
Q  215 tcaagactttg 225  Q
    |||||||||||    
T  32836966 tcaagactttg 32836956  T

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Target: chr3; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 230 - 359
Target Start/End: Complemental strand, 32836909 - 32836780
Alignment:
Q  230 gatctttgtttttgcgataaatttttagattacataaataatcttaccaacctcaaatttgttgaatcaagaagctttgcttttgttgaatatgataaac 329  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||    
T  32836909 gatctttgtttttgcgataaatttttaaattacataaataatcttaccaaccttaaatttgttgaatcaagaagctttacttttgttgaatatgatgaac 32836810  T
Q  330 tttatttatgctctttttcaatcaaggaac 359  Q
    |||||||||||| |||||||||||||||||    
T  32836809 tttatttatgctttttttcaatcaaggaac 32836780  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 440 - 490
Target Start/End: Complemental strand, 45441763 - 45441713
Alignment:
Q  440 gtcctttttcgacctgaagttggtagtgcttgcatttgtagggtgatataa 490  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45441763 gtcctttttcgacctgaagttggcagtgcttgcatttgtagggtgatataa 45441713  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 9176902 - 9176821
Alignment:
Q  258 attacataaataatcttaccaacctcaaatttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatg 339  Q
    |||||||||||||||||||||  ||||| ||| ||||||||||||| | || ||||||||||||||||  ||||||||||||    
T  9176902 attacataaataatcttaccactctcaatttttttgaatcaagaagatatgtttttgttgaatatgatggactttatttatg 9176821  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 32826223 - 32826174
Alignment:
Q  203 aaaacaattttttcaagactttgaagggatctttgtttttgcgataaatt 252  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32826223 aaaacaattttttcaagactttgaagggatctttgtttttacgataaatt 32826174  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 37341420 - 37341492
Alignment:
Q  287 tttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaac 359  Q
    |||||||||||||| | ||||  ||||||| ||| |||||||||||||||||| | ||||| |||||||||||    
T  37341420 tttgttgaatcaaggaactttatttttgttaaatgtgataaactttatttatgttttttttgaatcaaggaac 37341492  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 32847706 - 32847647
Alignment:
Q  280 cctcaaatttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatg 339  Q
    ||||||||||||||||| ||||| ||||| |||||| ||||||||| || ||||||||||    
T  32847706 cctcaaatttgttgaattaagaaactttgtttttgtggaatatgatgaattttatttatg 32847647  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 26749086 - 26749037
Alignment:
Q  285 aatttgttgaatcaagaagctttgcttttgttgaatatgataaactttatt 335  Q
    ||||||||||||||||||| |||  |||||| |||||||||||||||||||    
T  26749086 aatttgttgaatcaagaagtttta-ttttgtcgaatatgataaactttatt 26749037  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 13826079 - 13826028
Alignment:
Q  289 tgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgct 341  Q
    ||||||| ||||| |||||| |||||||||||||||| ||||||| |||||||    
T  13826079 tgttgaagcaaga-gctttgtttttgttgaatatgatgaactttacttatgct 13826028  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 17930201 - 17930260
Alignment:
Q  280 cctcaaatttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatg 339  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||    
T  17930201 cctcaaatttcttgaatcaagaagctttgtttttgttgaatatgatgaactttatttatg 17930260  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 5107200 - 5107148
Alignment:
Q  287 tttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatg 339  Q
    |||||||||||||| | ||||| ||||||| |||||||| ||||| |||||||    
T  5107200 tttgttgaatcaaggaactttgtttttgttaaatatgatgaacttgatttatg 5107148  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 10788635 - 10788583
Alignment:
Q  302 agctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaa 354  Q
    ||||||| |||||||||||||||| ||||||| ||||||| || || ||||||    
T  10788635 agctttgtttttgttgaatatgatgaactttacttatgcttttgttaaatcaa 10788583  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 22519156 - 22519227
Alignment:
Q  288 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaac 359  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||||||||| || || |||||| ||||    
T  22519156 ttgttgaaacaagaaactttgtttttgttgaatatgataaactttatttatgcttttgttaaatcaaagaac 22519227  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 31457437 - 31457366
Alignment:
Q  288 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaac 359  Q
    |||||||| ||||||| |||| |||||||||||||||| |||||||||||| || || || |||||| ||||    
T  31457437 ttgttgaagcaagaagttttgtttttgttgaatatgatgaactttatttatacttttgttaaatcaaagaac 31457366  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 36298948 - 36298898
Alignment:
Q  288 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttat 338  Q
    |||||||| ||| |||||||| |||||||||||||||| | ||||||||||    
T  36298948 ttgttgaagcaataagctttgtttttgttgaatatgatgagctttatttat 36298898  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 31006180 - 31006127
Alignment:
Q  288 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgct 341  Q
    |||||||| |||||| ||||| |||||||||||||||||| |||||||||||||    
T  31006180 ttgttgaagcaagaaactttgtttttgttgaatatgataatctttatttatgct 31006127  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 6870586 - 6870652
Alignment:
Q  288 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaa 354  Q
    ||||| || ||||||| |||| |||||||||||||||| | ||||||||||||| || || ||||||    
T  6870586 ttgttaaagcaagaagttttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaa 6870652  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 2209703 - 2209654
Alignment:
Q  288 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttattta 337  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  2209703 ttgttgaagcaagaagctttgtttttgttgaatatgataagctttattta 2209654  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 42555484 - 42555433
Alignment:
Q  290 gttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgct 341  Q
    |||||| ||| |||||||| |||||||||||||||||| |||||||||||||    
T  42555484 gttgaagcaataagctttgtttttgttgaatatgataacctttatttatgct 42555433  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 40714808 - 40714855
Alignment:
Q  288 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatt 335  Q
    |||||||| |||||||||||| |||||||||||||||| | |||||||    
T  40714808 ttgttgaagcaagaagctttgtttttgttgaatatgatgagctttatt 40714855  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 17120273 - 17120335
Alignment:
Q  297 caagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaac 359  Q
    |||||| ||||| |||||||||||||||| | ||||||||||||| || || |||||| ||||    
T  17120273 caagaaactttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaaagaac 17120335  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 51357342 - 51357292
Alignment:
Q  288 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttat 338  Q
    |||||||| ||| |||||||| |||||||||||||||| | ||||||||||    
T  51357342 ttgttgaaacaataagctttgtttttgttgaatatgatgagctttatttat 51357292  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 38264311 - 38264363
Alignment:
Q  289 tgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgct 341  Q
    ||||||| |||||| ||||| |||  ||||||||||||| |||||||||||||    
T  38264311 tgttgaagcaagaaactttgttttaattgaatatgataatctttatttatgct 38264363  T

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