View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14787_low_12 (Length: 243)

Name: NF14787_low_12

Description: NF14787

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14787_low_12

[»] chr5 (4 HSPs)

[»] chr7 (1 HSPs)

Alignment Details

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 4)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 198; E-Value: 1e-108

Query Start/End: Original strand, 1 - 243

Target Start/End: Original strand, 37850470 - 37850718

Alignment:

Q	1	cgacaaatcaactggtcacata------agtgaacttaaaattgtgacgatagtacttggatcctcgatatgtatatctgtagcgctgctaataataatt	94	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37850470	cgacaaatcaactggtcacatagggatcagtgaacttaaaattgtgacgatagtacttggatcctcgatatgtatatctgtaccactgctaataataatt	37850569	T

Q	95	cgaatgtatctcaatagagatgaattgaaaaggacctctgatcttaacaaaaggatttctaataaacgaggagaaggaaggaagctgtctggccttcata	194	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|
T	37850570	cgaatgtatctcaatagagatgaattgaaaaggacctctgatcttaataaaaggatttctaataaacgaggaggaggaaggaagctgcctgaccttcata	37850669	T

Q	195	agcaagtgttggaggctactgagaacctaaatgatcggtatattcttgg	243	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	37850670	agcaagtgttggaggctactgagaacctaaatgatcggtatattattgg	37850718	T

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Target: chr5; HSP #2

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 33 - 141

Target Start/End: Original strand, 28089623 - 28089731

Alignment:

Q	33	aaattgtgacgatagtacttggatcctcgatatgtatatctgtagcgctgctaataataattcgaatgtatctcaatagagatgaattgaaaaggacctc	132	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\| \| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	28089623	aaattgtgatgatagaacttggatcctcaatattgatttctgatgtgctggtgataataattcaaatgtatctccatagaaatgaattgaaaagggcctt	28089722	T

Q	133	tgatcttaa	141	Q
		\| \|\|\|\|\|\|\|
T	28089723	ttatcttaa	28089731	T

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Target: chr5; HSP #3

Raw Score: 35; E-Value: 0.00000000009

Query Start/End: Original strand, 33 - 139

Target Start/End: Original strand, 37837135 - 37837241

Alignment:

Q	33	aaattgtgacgatagtacttggatcctcgatatgtatatctgtagcgctgctaataataattcgaatgtatctcaatagagatgaattgaaaaggacctc	132	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\| \| \| \|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|
T	37837135	aaattgtaatgatagtacttggatcctcaatattgatttctgctgtgatggtgataatatttcgaatgtatctccatagaaatgaattgaaaggggcctc	37837234	T

Q	133	tgatctt	139	Q
		\| \|\|\|\|\|
T	37837235	ttatctt	37837241	T

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Target: chr5; HSP #4

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 190 - 243

Target Start/End: Original strand, 37837325 - 37837378

Alignment:

Q	190	tcataagcaagtgttggaggctactgagaacctaaatgatcggtatattcttgg	243	Q
		\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|
T	37837325	tcatgagctagttttggaggctacagagaacctaaatgatcagtatattattgg	37837378	T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 172 - 243

Target Start/End: Original strand, 36866009 - 36866080

Alignment:

Q	172	aaggaagctgtctggccttcataagcaagtgttggaggctactgagaacctaaatgatcggtatattcttgg	243	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|
T	36866009	aaggaagctgcctgaccttcatgatcaagtgttggaagctacagagaacctaaatgatcaatatattattgg	36866080	T

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