View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14787_low_14 (Length: 220)
Name: NF14787_low_14
Description: NF14787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14787_low_14 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38943370 - 38943589
Alignment:
| Q |
1 |
gaagactcattaagccttagtggttatgatatgttgtgatagtgcatagcaattaagctcaaaatataagaatgatcaaagattcaaagttgtagcatat |
100 |
Q |
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| T |
38943370 |
gaagactcattaagccttagtggttatgatatgttgtgatactgcatggcaattaagctcaaaatataagaatgatcaaagattcaaagttgtagcatat |
38943469 |
T |
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| Q |
101 |
aaatttccgtaacttattttaatttctttgaacgctcattaagccttggtggttatgatatgttgtgacagagcatagcaattaagctcgaataataaga |
200 |
Q |
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| T |
38943470 |
aaatttccgtaacttattttaatttctttgaacgctcattaagccttggtggttatgatatgttgtgacagagcatagcaattaagctcgaataataaga |
38943569 |
T |
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| Q |
201 |
atgatcaatgttacgactca |
220 |
Q |
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| T |
38943570 |
atgatcaatgttacgactca |
38943589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 38943245 - 38943448
Alignment:
| Q |
1 |
gaagactcattaagccttagtggttatgatatgttgtgatagtgcatagcaattaagctcaaaatataagaatgatcaaagattcaaagttgtagcatat |
100 |
Q |
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| T |
38943245 |
gaagactcattaagccttagtggttatgatatgttgtgatagtgcatagcaattaagctcaaaatataagaatga--------tcaaagttgtagcatat |
38943336 |
T |
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| Q |
101 |
-aaatttccgtaacttatttt---aatttctttgaacgctcattaagccttggtggttatgatatgttgtgacagagcatagcaattaagctcgaataat |
196 |
Q |
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| T |
38943337 |
aaaatttctggaacttcttttttctgtgactgtgaagactcattaagccttagtggttatgatatgttgtgatactgcatggcaattaagctcaaaatat |
38943436 |
T |
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| Q |
197 |
aagaatgatcaa |
208 |
Q |
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| T |
38943437 |
aagaatgatcaa |
38943448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 38943226 - 38943323
Alignment:
| Q |
111 |
aacttattttaatttctttgaacgctcattaagccttggtggttatgatatgttgtgacagagcatagcaattaagctcgaataataagaatgatcaa |
208 |
Q |
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| T |
38943226 |
aacttcttttaatttctgcgaagactcattaagccttagtggttatgatatgttgtgatagtgcatagcaattaagctcaaaatataagaatgatcaa |
38943323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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