View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14787_low_2 (Length: 408)
Name: NF14787_low_2
Description: NF14787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14787_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 31046538 - 31046149
Alignment:
| Q |
1 |
gatgacaagagtgtcccgaaaataatgaagggctggctgacaatttacacctcagacgacccaaaatcacctttcacaaaaacaagcgtgagaacacagg |
100 |
Q |
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| T |
31046538 |
gatgacaagagtgtcccgaaaataatgaagggctggctgacaatttacacctcagacgacccaaaatcacctttcacaaaaacaagcgtgagaacacagg |
31046439 |
T |
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| Q |
101 |
ttctaaacatagtaaaaagtttgttgaacaaatacaagaatgaaaatccaagtgtggtgctagtaggacatagtctaggtgcaagtttgtcaattgtgag |
200 |
Q |
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| T |
31046438 |
ttctaaacatagtaaaaagtttgttgaacaaatacaagaatgaaaatccaagtgtggtgctagtaggacatagtctaggtgcaagtttgtcaattgtgag |
31046339 |
T |
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| Q |
201 |
tgcttttgatttggtggagaacggtgtaacagacattcccgttactgcatttgtgtttgggtccccacaagttgggaacaaagctttcaatgataggttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31046338 |
tgcttttgatttggtggagaacggtgtaacagacattcccgttactgcatttgtgtttgggtccccacaagttgggaacaaagctttcaatgataggttc |
31046239 |
T |
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| Q |
301 |
aaaaagtttcaaaatttgaaggttttgcatgtgaggaatgtgattgatcttataccacattatccagggaagttattggggtatgagtat |
390 |
Q |
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| T |
31046238 |
aaaaagtttcaaaatttgaaggttttgcatgtgaggaatgtgattgatcttataccacattatccagggaagttattggggtatgagtat |
31046149 |
T |
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