View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14787_low_8 (Length: 289)
Name: NF14787_low_8
Description: NF14787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14787_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 15419272 - 15419019
Alignment:
| Q |
17 |
atggacttcctgaggtaataaagaaaagatgtaaaatgtataacagcagggaagagaagaaagaaaaacagttagttaaggagaaaaatggcggagtttt |
116 |
Q |
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| T |
15419272 |
atggactacctgaggtaataaagaaaagatgtaaaatgtataacagcagggaagagaagaaagaaaaacagttagttaaggagaaaaatggcggagtttt |
15419173 |
T |
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| Q |
117 |
accgccggatacaacaattgatgtccctaaagctacatggatggctgatggtactcattggccaggaacttggcaaaattctacacctgatcatgctaaa |
216 |
Q |
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| T |
15419172 |
accaccggatacaacaattgatgtccctaaagctacatggatggctgatggtactcattggccaggaacttggcaaaattctacacctgatcatgctaaa |
15419073 |
T |
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| Q |
217 |
ggtgaccatgctggaatcttgcaggtaccatttaatttctcctctcatccatca |
270 |
Q |
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| T |
15419072 |
ggtgaccatgctggaatcttgcaggtaccatttaatttctcctctcatccatca |
15419019 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 29918755 - 29918711
Alignment:
| Q |
145 |
aaagctacatggatggctgatggtactcattggccaggaacttgg |
189 |
Q |
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| T |
29918755 |
aaagcaacatggatggctgatggatctcattggccagggacttgg |
29918711 |
T |
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