View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14788_low_2 (Length: 313)

Name: NF14788_low_2
Description: NF14788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14788_low_2
NF14788_low_2
[»] chr6 (20 HSPs)
chr6 (1-299)||(6473041-6473339)
chr6 (62-299)||(13035740-13035977)
chr6 (6-298)||(6526259-6526551)
chr6 (1-248)||(6465215-6465462)
chr6 (1-209)||(1831877-1832085)
chr6 (3-242)||(6505364-6505603)
chr6 (5-250)||(6528079-6528324)
chr6 (1-213)||(6457255-6457467)
chr6 (45-250)||(6496599-6496804)
chr6 (45-298)||(6461820-6462073)
chr6 (1-133)||(1827157-1827303)
chr6 (42-109)||(6516295-6516362)
chr6 (159-242)||(6516159-6516242)
chr6 (58-133)||(1839050-1839125)
chr6 (35-99)||(1841986-1842050)
chr6 (149-292)||(6523423-6523566)
chr6 (175-241)||(6520629-6520695)
chr6 (75-133)||(1822310-1822368)
chr6 (1-93)||(1845847-1845939)
chr6 (1-113)||(6520757-6520869)
[»] chr7 (5 HSPs)
chr7 (3-262)||(3753863-3754122)
chr7 (41-132)||(4046154-4046245)
chr7 (1-106)||(46383298-46383404)
chr7 (43-109)||(46383849-46383914)
chr7 (148-250)||(9665352-9665454)
[»] chr4 (1 HSPs)
chr4 (148-250)||(13536376-13536478)
[»] chr1 (3 HSPs)
chr1 (179-295)||(35231435-35231551)
chr1 (167-295)||(35243075-35243203)
chr1 (1-61)||(35244261-35244321)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 6473339 - 6473041
Alignment:
Q  1 tgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatg 100  Q
    |||||| |||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6473339 tgagtgcataggcttgaggcttatatttcttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaagtaacctaaatgataatgatg 6473240  T
Q  101 atcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6473239 atcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagagaaatccatttcca 6473140  T
Q  201 ttaaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaattgcatcaaggtaattcacctcttcagctatcaatgct 299  Q
    ||||| |||||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6473139 ttaaatgttccatcgagccaaggctcggtggattccttcaaatatttcttcacaattggaattgcatcaaggtaattcacctcttcggctatcaatgct 6473041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 62 - 299
Target Start/End: Complemental strand, 13035977 - 13035740
Alignment:
Q  62 tgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttata 161  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  13035977 tgcaattccatagagaaagtaacctaaatgataatgatggtcattataaattccaaacccgaaatcagcaccggtatcagtagaaccttgtttcgttata 13035878  T
Q  162 atacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaa 261  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13035877 atacctccccattttttatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaagtacttcttcacaattggaa 13035778  T
Q  262 ttgcatcaaggtaattcacctcttcagctatcaatgct 299  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  13035777 ttgcatcaaggtaattcacctcttcagttatcaatgct 13035740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 298
Target Start/End: Original strand, 6526259 - 6526551
Alignment:
Q  6 gaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcat 105  Q
    ||||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  6526259 gaataggcttgagacttatactttctaccccaaataggatcaatcttagcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcat 6526358  T
Q  106 tataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaa 205  Q
    |||||| ||||||||| ||||||||||||| ||  |||||||| |||||||||| |||| ||||||||||||||||||| || |||||||||||||||||    
T  6526359 tataaactccgaacccaaaatcagcaccggcatttgtagaaccatgtttggttacaatatctccccattttttatcataaagaaatccatttccattaaa 6526458  T
Q  206 agttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaattgcatcaaggtaattcacctcttcagctatcaatgc 298  Q
    |||||||||||||||||||||||||| |||||||||||||||  | ||  |||||||  |||||||| ||   |||||||| |||||||||||    
T  6526459 agttccatcaagccaaggctcaatggtttccttcaaatactttctaacttttggaatcacatcaaggaaacaaacctcttccgctatcaatgc 6526551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 6465215 - 6465462
Alignment:
Q  1 tgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatg 100  Q
    |||||||||| |||||||||||||||||| ||| |||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||    
T  6465215 tgagtgaataagcttgaggcttatacttcctaccccaaattggatcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatg 6465314  T
Q  101 atcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttcca 200  Q
    ||||||||||| |||||| || ||||||||||| |||||| |||| ||||||||||| | ||| ||||||||||||  ||||||||| ||||||||||||    
T  6465315 atcattataaactccgaatccaaaatcagcaccagtatcattagacccttgtttggtaacaattcctccccattttccatcatagagaaatccatttcca 6465414  T
Q  201 ttaaaagttccatcaagccaaggctcaatggattccttcaaatacttc 248  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||    
T  6465415 ttaaaagttccatcaagccaaggctcaatagtttccttcaaaaacttc 6465462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1832085 - 1831877
Alignment:
Q  1 tgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatg 100  Q
    |||||||||||||||||||||||||||   ||| |||||| ||||||||||| |||||||||||||||||| | |||||||| |||||||||||||||||    
T  1832085 tgagtgaataggcttgaggcttatactctctaccccaaattggatcaatctttgcaagcactgcaattccaaagagaaagtatcctaaatgataatgatg 1831986  T
Q  101 atcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttcca 200  Q
     || |||| |||||| |||||||||||| |||| |||| | |||| |||||||||| ||||||| |||||||||| ||| ||||||| | |||||||| |    
T  1831985 gtcgttattaattccaaacccgaaatcaacaccagtattattagacccttgtttggctataatagctccccatttcttaccatagagaattccatttcta 1831886  T
Q  201 ttaaaagtt 209  Q
    | |||||||    
T  1831885 tgaaaagtt 1831877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 6505364 - 6505603
Alignment:
Q  3 agtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgat 102  Q
    |||||||||||||||| |||||| ||| ||| |||  | ||||| |||||  |||||||||| ||| | |||||||| || ||||| ||| | |||||||    
T  6505364 agtgaataggcttgagccttatatttcctaccccatgttggatcgatctttacaagcactgctattgcgtaaagaaaatatcctaagtgaaagtgatgat 6505463  T
Q  103 cattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttccatt 202  Q
    |||| ||||||||||| ||||||||| ||||   |||| |||| |||||||  || ||||  |||||||||||||||||||| || ||||||||||||||    
T  6505464 cattgtaaattccgaaaccgaaatcaccaccaccatcattagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccatt 6505563  T
Q  203 aaaagttccatcaagccaaggctcaatggattccttcaaa 242  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  6505564 aaaagttccatcaagccaaggctcaatggtttccttcaaa 6505603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 6528079 - 6528324
Alignment:
Q  5 tgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatca 104  Q
    |||||| ||||||| |||||||||| ||| ||||   |||||||||||||||||||| |||||| |||||| ||| || || |||  |  |||||||| |    
T  6528079 tgaatatgcttgagccttatacttcctaccccaagctggatcaatcttagcaagcacagcaattgcataaacaaaatatcccaaagtaccatgatgatta 6528178  T
Q  105 ttataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaa 204  Q
    ||||||||||| || ||  | ||||||   | ||||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||| || || |    
T  6528179 ttataaattccaaaaccatactcagcatttgaatcagtagagccttgttttgtaataatccctccccattttttatcatagagaaatccattacctttga 6528278  T
Q  205 aagttccatcaagccaaggctcaatggattccttcaaatacttctt 250  Q
    |||||||||||||||||||||||||    |||||||||||||||||    
T  6528279 aagttccatcaagccaaggctcaatcatctccttcaaatacttctt 6528324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6457255 - 6457467
Alignment:
Q  1 tgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatg 100  Q
    |||||||||| |||||||| ||||||||  | | ||||   ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  6457255 tgagtgaataagcttgaggtttatactttcttccccaagctggatcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatg 6457354  T
Q  101 atcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttcca 200  Q
    |||||||||||| |||||||| ||||| || || | |||   ||| ||||||||||| || || ||||||||||||  |||||| || || |||||| |     
T  6457355 atcattataaataccgaacccaaaatctgcccctgaatcttgagagccttgtttggtaatgattcctccccattttccatcataaagaaaaccattttcg 6457454  T
Q  201 ttaaaagttccat 213  Q
    |||||||||||||    
T  6457455 ttaaaagttccat 6457467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 45 - 250
Target Start/End: Original strand, 6496599 - 6496804
Alignment:
Q  45 tcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcaccggtatcagtag 144  Q
    |||||||||| ||| || |||||||||||||||||||| ||||| |||| |  |||||||||||| |||||||| ||| ||||||||   | ||||  ||    
T  6496599 tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcattagaatcaacag 6496698  T
Q  145 aaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaata 244  Q
    | |||||| |||| | ||| || |||||||| | ||| |  || |||||||| ||||| ||||||||||| | |||||||||||||| ||| |||||| |    
T  6496699 acccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaa 6496798  T
Q  245 cttctt 250  Q
    ||||||    
T  6496799 cttctt 6496804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 298
Target Start/End: Complemental strand, 6462073 - 6461820
Alignment:
Q  45 tcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcaccggtatcagtag 144  Q
    |||||||| | ||| ||||||||||||||||||||||| || || |||| | | |||||| ||||||||||||| ||| | |||||    | |||  |||    
T  6462073 tcaatctttgtaagaactgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatag 6461974  T
Q  145 aaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaata 244  Q
    | ||||||| ||| | ||| || |||||||| | ||| |  || |||||||| ||||| ||||||||||| | |||||||||||||| ||| || ||| |    
T  6461973 acccttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaa 6461874  T
Q  245 cttcttcacaattggaattgcatcaaggtaattcacctcttcagctatcaatgc 298  Q
    |||||| ||  |||||||  |||| | ||||   ||||||||||||||||||||    
T  6461873 cttcttaacctttggaatcacatctaagtaagaaacctcttcagctatcaatgc 6461820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 1827303 - 1827157
Alignment:
Q  1 tgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagta--------------acct 86  Q
    ||||||||||||||||||||||||| ||  ||| |||||| | ||||||||| |||||||||||||||| ||| ||||||||              ||||    
T  1827303 tgagtgaataggcttgaggcttatattttctaccccaaattgaatcaatctttgcaagcactgcaattcgatagagaaagtatcctaaaatttaggacct 1827204  T
Q  87 aaatgataatgatgatcattataaattccgaacccgaaatcagcacc 133  Q
    |||||||||||||| || ||||||||||| |||||||||||||||||    
T  1827203 aaatgataatgatggtcgttataaattccaaacccgaaatcagcacc 1827157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 6516362 - 6516295
Alignment:
Q  42 ggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattata 109  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  6516362 ggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattata 6516295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 6516242 - 6516159
Alignment:
Q  159 ataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaa 242  Q
    ||||| |||||||||||||| ||||| || ||||||||||| |||||||||||||||||||| || ||||| | ||||||||||    
T  6516242 ataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaa 6516159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 1839125 - 1839050
Alignment:
Q  58 gcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcacc 133  Q
    ||||||||||||  || ||||| || ||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  1839125 gcactgcaattcattagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcacc 1839050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 1842050 - 1841986
Alignment:
Q  35 ccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgat 99  Q
    |||||| ||||||||||||||| ||| |||||||||||| |||||||||| ||||||||| ||||    
T  1842050 ccaaattggatcaatcttagcatgcaatgcaattccatagagaaagtaacttaaatgatattgat 1841986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 6523423 - 6523566
Alignment:
Q  149 ttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttc 248  Q
    ||||||||| | |||| |||||||||| | |||||| || |||||||||   || |||||||||||||||||||||||||||   || |||||||||||     
T  6523423 ttgtttggtaacaatatctccccatttctgatcatatagaaatccattttatttgaaagttccatcaagccaaggctcaatgatctctttcaaatacttt 6523522  T
Q  249 ttcacaattggaattgcatcaaggtaattcacctcttcagctat 292  Q
    || ||  ||| |||  |||||||| ||   ||||||||||||||    
T  6523523 ttaacttttgaaatcacatcaaggaaacaaacctcttcagctat 6523566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 6520695 - 6520629
Alignment:
Q  175 ttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaa 241  Q
    |||||||||| || || |||||| || |||||||||||||||||||||||||||| | |||||||||    
T  6520695 ttttatcatatagaaaaccattttcactaaaagttccatcaagccaaggctcaatagtttccttcaa 6520629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 1822368 - 1822310
Alignment:
Q  75 agaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcacc 133  Q
    ||||||||  |||||||||||||||| |||||||||||||  ||||| |||||||||||    
T  1822368 agaaagtattctaaatgataatgatggtcattataaattcaaaacccaaaatcagcacc 1822310  T

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Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 1845939 - 1845847
Alignment:
Q  1 tgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgat 93  Q
    ||||| ||||||||||||||||| | ||   || |||||| ||||||||||| |||||||||| |||| | || |||||||| | ||||||||    
T  1845939 tgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgcaagcactgaaatttcgtagagaaagtatcgtaaatgat 1845847  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 6520869 - 6520757
Alignment:
Q  1 tgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatg 100  Q
    |||||| ||| |||||||||||||||||  | | ||||   |||||||  |||||||| || ||||| |||||||| || || |||||||||| | | ||    
T  6520869 tgagtgcataagcttgaggcttatactttcttccccaatcgggatcaagtttagcaagaacagcaataccataaaggaaatatcctaaatgattaagctg 6520770  T
Q  101 atcattataaatt 113  Q
    | |||||||||||    
T  6520769 agcattataaatt 6520757  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 3754122 - 3753863
Alignment:
Q  3 agtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgat 102  Q
    |||||||| ||||| || |||||||| |  | |||||  ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  3754122 agtgaataagcttgtggtttatacttttgtccccaaaatggatcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgat 3754023  T
Q  103 cattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggtta-taatacctccccattttttatcatagaggaatccatttccat 201  Q
    ||||||||||||| || || |||||| || | | || | ||   |||||||| || | |||| || ||||||||||| ||||| | ||| ||||| || |    
T  3754022 cattataaattccaaaaccaaaatcaacaactgaattattaaccccttgtttagtaactaat-ccaccccattttttttcatacaagaaaccattccctt 3753924  T
Q  202 taaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaat 262  Q
    | ||||||||||  | ||| |||||||| | |||||||||| | ||||| | |||||||||    
T  3753923 tgaaagttccattcaaccatggctcaatagtttccttcaaaaaattcttgataattggaat 3753863  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 4046154 - 4046245
Alignment:
Q  41 aggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcac 132  Q
    ||||||||| || ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||||||||    
T  4046154 aggatcaatttttgcaagaactccaattccataaagaaaataacctaaatgataatgatgatcattatacattccaaaaccaaaatcagcac 4046245  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 46383298 - 46383404
Alignment:
Q  1 tgagtgaataggctt-gaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgat 99  Q
    |||||||||| |||| ||| |||||||||| ||| |||||||||||||||||| || ||||||| ||||||||| ||| | || ||||||||||||||||    
T  46383298 tgagtgaataagctttgagacttatacttcctaccccaaataggatcaatcttggcgagcactgtaattccatagagagaatatcctaaatgataatgat 46383397  T
Q  100 gatcatt 106  Q
    |||||||    
T  46383398 gatcatt 46383404  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 46383849 - 46383914
Alignment:
Q  43 gatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattata 109  Q
    ||||||||||||||||||| ||||||||||| ||||| || |||||||||| |||||||||||||||    
T  46383849 gatcaatcttagcaagcac-gcaattccatagagaaaatatcctaaatgatgatgatgatcattata 46383914  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 9665454 - 9665352
Alignment:
Q  148 cttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatactt 247  Q
    |||||||||||| ||| ||||||||||| | |||||| || ||||||||| | || ||||||||||||| ||| || ||||| | ||| |||||| ||||    
T  9665454 cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaactt 9665355  T
Q  248 ctt 250  Q
    |||    
T  9665354 ctt 9665352  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 13536478 - 13536376
Alignment:
Q  148 cttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatactt 247  Q
    |||||||||||| ||| ||||||||||| | |||||| || ||||||||| | || ||||||||||||| ||| || ||||| | ||| |||||| ||||    
T  13536478 cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaactt 13536379  T
Q  248 ctt 250  Q
    |||    
T  13536378 ctt 13536376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 35231551 - 35231435
Alignment:
Q  179 atcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaattgcatcaaggtaattc 278  Q
    |||||| || ||||||||| | || | || ||||||||||||||||||||||   || |||||||||||||| ||  |||||||  |||||||| ||       
T  35231551 atcatatagaaatccattttctttgatagctccatcaagccaaggctcaatgatctctttcaaatacttcttaacttttggaatcacatcaaggaaacaa 35231452  T
Q  279 acctcttcagctatcaa 295  Q
    |||||||||||||||||    
T  35231451 acctcttcagctatcaa 35231435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 35243203 - 35243075
Alignment:
Q  167 tccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaattgca 266  Q
    |||||||| || |||||| |  ||| ||||| | || |||||||||||||||||| ||||||||   || |||||||||||||| ||  |||||||  ||    
T  35243203 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcaca 35243104  T
Q  267 tcaaggtaattcacctcttcagctatcaa 295  Q
    |||| | ||   |||||||||||||||||    
T  35243103 tcaaagaaacaaacctcttcagctatcaa 35243075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 35244321 - 35244261
Alignment:
Q  1 tgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcac 61  Q
    ||||||||||||||||||  ||||||||| ||| |||| | |||||||||||| |||||||    
T  35244321 tgagtgaataggcttgagatttatacttcctaccccaagttggatcaatcttaacaagcac 35244261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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