View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14788_low_3 (Length: 250)

Name: NF14788_low_3
Description: NF14788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14788_low_3
NF14788_low_3
[»] chr1 (2 HSPs)
chr1 (1-238)||(46640122-46640359)
chr1 (1-238)||(46642414-46642651)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 46640359 - 46640122
Alignment:
Q  1 cttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacagtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46640359 cttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgt 46640260  T
Q  101 gtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46640259 gtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtg 46640160  T
Q  201 agtcttgggtttagtggtggtagagattggtgtgatga 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46640159 agtcttgggtttagtggtggtagagattggtgtgatga 46640122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 46642651 - 46642414
Alignment:
Q  1 cttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacagtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  46642651 cttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaatgatacctgt 46642552  T
Q  101 gtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtg 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46642551 gtagttgcatacatttgggccataccagtttaaagtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtg 46642452  T
Q  201 agtcttgggtttagtggtggtagagattggtgtgatga 238  Q
    |||||||| |||||||||||||||||||||||||||||    
T  46642451 agtcttggatttagtggtggtagagattggtgtgatga 46642414  T

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