View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14788_low_5 (Length: 236)

Name: NF14788_low_5
Description: NF14788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14788_low_5
NF14788_low_5
[»] chr4 (8 HSPs)
chr4 (16-234)||(39330944-39331147)
chr4 (164-219)||(29116297-29116352)
chr4 (170-236)||(30623565-30623630)
chr4 (168-234)||(40836756-40836821)
chr4 (168-234)||(48973319-48973384)
chr4 (179-220)||(16970825-16970866)
chr4 (186-235)||(38932751-38932799)
chr4 (181-229)||(40997442-40997489)
[»] chr7 (9 HSPs)
chr7 (168-236)||(49078134-49078201)
chr7 (171-220)||(29197037-29197086)
chr7 (168-220)||(5362382-5362434)
chr7 (168-220)||(34703766-34703818)
chr7 (34-154)||(32996432-32996551)
chr7 (188-234)||(5198019-5198064)
chr7 (168-201)||(6442007-6442040)
chr7 (171-235)||(3116919-3116982)
chr7 (172-236)||(29778720-29778783)
[»] chr3 (8 HSPs)
chr3 (171-234)||(30843664-30843726)
chr3 (181-234)||(26499845-26499897)
chr3 (171-235)||(1183136-1183199)
chr3 (168-220)||(34979092-34979144)
chr3 (179-234)||(20948286-20948340)
chr3 (168-235)||(23195638-23195704)
chr3 (146-230)||(46008654-46008739)
chr3 (25-86)||(11508070-11508131)
[»] chr2 (3 HSPs)
chr2 (171-231)||(1901619-1901678)
chr2 (178-236)||(14105628-14105687)
chr2 (67-100)||(15818570-15818603)
[»] chr1 (7 HSPs)
chr1 (30-83)||(48701717-48701770)
chr1 (168-235)||(6541128-6541194)
chr1 (181-236)||(34826991-34827045)
chr1 (28-73)||(46500805-46500850)
chr1 (24-84)||(5529869-5529929)
chr1 (29-85)||(29795258-29795314)
chr1 (171-231)||(36144969-36145028)
[»] chr6 (5 HSPs)
chr6 (179-215)||(8161349-8161385)
chr6 (184-234)||(31142041-31142090)
chr6 (27-84)||(24084628-24084685)
chr6 (26-58)||(998652-998684)
chr6 (20-52)||(6584327-6584359)
[»] chr5 (7 HSPs)
chr5 (179-230)||(917085-917135)
chr5 (27-122)||(22579466-22579560)
chr5 (178-212)||(3599942-3599976)
chr5 (181-235)||(26675128-26675180)
chr5 (181-235)||(26946736-26946788)
chr5 (25-86)||(24444393-24444454)
chr5 (172-220)||(14460072-14460120)
[»] scaffold0687 (1 HSPs)
scaffold0687 (184-233)||(1703-1751)
[»] chr8 (2 HSPs)
chr8 (184-233)||(7604019-7604067)
chr8 (134-162)||(21600558-21600586)
[»] scaffold0022 (1 HSPs)
scaffold0022 (29-85)||(82877-82933)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 39330944 - 39331147
Alignment:
Q  16 atattagcccttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtcaccgacgctaaaatacccccctcaatactc 115  Q
    ||||||| || | |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| | ||||||||||||| |||||||||||||    
T  39330944 atattagtcccttaatatatcaaaattttaaaatagtatctgactatgcactttgttaattaaaatagtcgctgacgctaaaatactcccctcaatactc 39331043  T
Q  116 acaataannnnnnncatgtatggattgaaatgacaataagtaagtatttaattatttataatgattgatatgacaataaataaatatattgaaagactga 215  Q
    |||||||       |||||| |||||||||||||||||||||||              || |||||||||||||||||||||| ||||||||||||||||    
T  39331044 acaataattcttttcatgtagggattgaaatgacaataagtaag--------------tactgattgatatgacaataaataagtatattgaaagactga 39331129  T
Q  216 tatgaacaatattaatgaa 234  Q
    ||| |||||||||||||||    
T  39331130 tat-aacaatattaatgaa 39331147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 29116297 - 29116352
Alignment:
Q  164 taattatttataatgattgatatgacaataaataaatatattgaaagactgatatg 219  Q
    ||||||||||||| || | |||||||||||||||||||||||||| |||| |||||    
T  29116297 taattatttataaggactaatatgacaataaataaatatattgaatgacttatatg 29116352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 30623630 - 30623565
Alignment:
Q  170 tttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaac 236  Q
    ||||||| |||||| |||||||||| ||||||||||||| ||||  ||| |||||||||| ||||||    
T  30623630 tttataaagattgacatgacaataagtaaatatattgaaggactagtat-aacaatattagtgaaac 30623565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 40836821 - 40836756
Alignment:
Q  168 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaa 234  Q
    ||||||||| || |||||||| ||||| ||| | ||||||||||||| |||| ||||||||||||||    
T  40836821 tatttataaggactgatatgataataagtaagtgtattgaaagactggtatg-acaatattaatgaa 40836756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 48973319 - 48973384
Alignment:
Q  168 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaa 234  Q
    ||||||||| ||  ||||||||||||| ||| ||||||||| |||| ||||| ||||||||||||||    
T  48973319 tatttataaggaccgatatgacaataagtaagtatattgaaggactaatatg-acaatattaatgaa 48973384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 16970866 - 16970825
Alignment:
Q  179 attgatatgacaataaataaatatattgaaagactgatatga 220  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||    
T  16970866 attgatatgacaaaaaataaatatattgagagactaatatga 16970825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 38932751 - 38932799
Alignment:
Q  186 tgacaataaataaatatattgaaagactgatatgaacaatattaatgaaa 235  Q
    ||||||||||||| ||||||||| |||| ||||| |||||||||||||||    
T  38932751 tgacaataaataagtatattgaaggactaatatg-acaatattaatgaaa 38932799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 40997489 - 40997442
Alignment:
Q  181 tgatatgacaataaataaatatattgaaagactgatatgaacaatatta 229  Q
    |||||||||||||||||| ||||||||||||  |||||| |||||||||    
T  40997489 tgatatgacaataaataagtatattgaaagatcgatatg-acaatatta 40997442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 49078134 - 49078201
Alignment:
Q  168 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaac 236  Q
    ||||||||||||||||||||||||| || |||||||||||| || ||||||| ||||||||||||||||    
T  49078134 tatttataatgattgatatgacaattaacaaatatattgaaggattgatatg-acaatattaatgaaac 49078201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 29197086 - 29197037
Alignment:
Q  171 ttataatgattgatatgacaataaataaatatattgaaagactgatatga 220  Q
    |||||| ||| ||||||||||||| ||| |||||||||||||||||||||    
T  29197086 ttataacgatcgatatgacaataagtaagtatattgaaagactgatatga 29197037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 5362434 - 5362382
Alignment:
Q  168 tatttataatgattgatatgacaataaataaatatattgaaagactgatatga 220  Q
    ||||||||| ||||||||||| ||||||||| ||||||||| |||| ||||||    
T  5362434 tatttataaggattgatatgataataaataagtatattgaaggactaatatga 5362382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 34703818 - 34703766
Alignment:
Q  168 tatttataatgattgatatgacaataaataaatatattgaaagactgatatga 220  Q
    ||||||||||||||||||| ||||||| ||| |||| ||||||||| ||||||    
T  34703818 tatttataatgattgatataacaataagtaagtatactgaaagactaatatga 34703766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 32996551 - 32996432
Alignment:
Q  34 atcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtcaccgacgctaaaatacccccctcaatactcacaataannnnnnncatg 133  Q
    ||||||||| ||||||||| ||| | | || ||||||||||| |||||||||  |||||||||||||  |||| ||||| ||||| |||       |||     
T  32996551 atcaaaattctaaaatagtctctgattgtgcactttgttaatcaaaatagtctacgacgctaaaataatcccc-caatattcacactaactcttttcata 32996453  T
Q  134 tatggattgaaatgacaataa 154  Q
    |||||| ||||||||||||||    
T  32996452 tatggactgaaatgacaataa 32996432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 5198019 - 5198064
Alignment:
Q  188 acaataaataaatatattgaaagactgatatgaacaatattaatgaa 234  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  5198019 acaataaataagtatattgaaagactaatatg-acaatattaatgaa 5198064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 6442007 - 6442040
Alignment:
Q  168 tatttataatgattgatatgacaataaataaata 201  Q
    ||||||||| ||||||||||||||||||||||||    
T  6442007 tatttataaagattgatatgacaataaataaata 6442040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 3116982 - 3116919
Alignment:
Q  171 ttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaa 235  Q
    |||||| || |||||| | ||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  3116982 ttataaagactgatataataataagtaagtatattgaaagactaatatg-acaatattaatgaaa 3116919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 29778783 - 29778720
Alignment:
Q  172 tataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaac 236  Q
    ||||| ||||||||||||||| ||||||||| ||||  |||| ||||| |||||||||| |||||    
T  29778783 tataaggattgatatgacaatgaataaatatgttgacggactaatatg-acaatattaacgaaac 29778720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 30843726 - 30843664
Alignment:
Q  171 ttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaa 234  Q
    |||||| || |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  30843726 ttataaggactgatatgacaataaataagtatattgaaagactaatatg-acaatattaatgaa 30843664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 26499897 - 26499845
Alignment:
Q  181 tgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaa 234  Q
    |||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||    
T  26499897 tgatatgataataaataagtatattgaatgactgatatgaa-aatattaatgaa 26499845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 1183136 - 1183199
Alignment:
Q  171 ttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaa 235  Q
    |||||| || |||||||||||||| || |||||||||| |||||||||| ||||||||| |||||    
T  1183136 ttataaggactgatatgacaataagtacatatattgaatgactgatatg-acaatattagtgaaa 1183199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 34979092 - 34979144
Alignment:
Q  168 tatttataatgattgatatgacaataaataaatatattgaaagactgatatga 220  Q
    ||||||||| ||||||||||||||||| ||| ||||||||| |||| ||||||    
T  34979092 tatttataacgattgatatgacaataagtaagtatattgaatgactaatatga 34979144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 20948340 - 20948286
Alignment:
Q  179 attgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaa 234  Q
    |||||||||||||||||||| |||||||||  ||||||||| | ||||||||||||    
T  20948340 attgatatgacaataaataagtatattgaagaactgatatg-ataatattaatgaa 20948286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 23195638 - 23195704
Alignment:
Q  168 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaa 235  Q
    |||||| || || |||||||||||||| ||| |||||||||||||| ||||| |||||||||| ||||    
T  23195638 tatttaaaaggactgatatgacaataattaagtatattgaaagactaatatg-acaatattaacgaaa 23195704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 46008739 - 46008654
Alignment:
Q  146 tgacaataagtaagtattta--attatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaa 230  Q
    |||||||||||||||| |||  || | ||||||| | |||||||||||||||||| |||||| ||||| | ||||| ||||||||||    
T  46008739 tgacaataagtaagtacttataataacttataataactgatatgacaataaataagtatattaaaagattaatatg-acaatattaa 46008654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 11508070 - 11508131
Alignment:
Q  25 cttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtca 86  Q
    |||| ||||||||||||||||||||| ||||||| | |||||  ||||| | ||||||||||    
T  11508070 cttctatatatcaaaattttaaaataatatctaattgtgtacgatgttagtcaaaatagtca 11508131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 1901678 - 1901619
Alignment:
Q  171 ttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaat 231  Q
    |||||| |||||||||||||||||||||||||||||||| | | ||||| |||||||||||    
T  1901678 ttataaagattgatatgacaataaataaatatattgaaaaattaatatg-acaatattaat 1901619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 14105628 - 14105687
Alignment:
Q  178 gattgatatgacaataaataa--atatattgaaagactgatatgaacaatattaatgaaac 236  Q
    ||||||||||||||||| |||  ||||||||| ||||||||||| |||||||||| |||||    
T  14105628 gattgatatgacaataagtaactatatattgagagactgatatg-acaatattaacgaaac 14105687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 15818603 - 15818570
Alignment:
Q  67 tttgttaataaaaatagtcaccgacgctaaaata 100  Q
    ||||||||| ||||||||||||||||||||||||    
T  15818603 tttgttaatcaaaatagtcaccgacgctaaaata 15818570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 48701770 - 48701717
Alignment:
Q  30 atatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatag 83  Q
    |||||| |||||||||||||||||||||| |||||| ||||||| | |||||||    
T  48701770 atatattaaaattttaaaatagtatctaattatgtattttgttagtcaaaatag 48701717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 6541194 - 6541128
Alignment:
Q  168 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaa 235  Q
    ||||||||| || |||||||||||||| ||| ||||||||| |||| ||||| |||||||||| ||||    
T  6541194 tatttataaagactgatatgacaataagtaagtatattgaaggactaatatg-acaatattaacgaaa 6541128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 34826991 - 34827045
Alignment:
Q  181 tgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaac 236  Q
    |||||||||||||||||| ||||||||| |||| ||||| |||||||||| |||||    
T  34826991 tgatatgacaataaataagtatattgaatgactaatatg-acaatattaacgaaac 34827045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 46500850 - 46500805
Alignment:
Q  28 caatatatcaaaattttaaaatagtatctaactatgtactttgtta 73  Q
    |||||||||||||||||||||||||   ||| ||||||||||||||    
T  46500850 caatatatcaaaattttaaaatagttcataattatgtactttgtta 46500805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 5529929 - 5529869
Alignment:
Q  24 ccttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagt 84  Q
    |||| |||||||||||||||||||||| |  |||| |||| ||||||||| | ||||||||    
T  5529929 cctttaatatatcaaaattttaaaataatccctaattatgcactttgttagtcaaaatagt 5529869  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 29795314 - 29795258
Alignment:
Q  29 aatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtc 85  Q
    |||||||||||||||||||||||||| | | | || ||| ||||||| |||||||||    
T  29795314 aatatatcaaaattttaaaatagtatttgattgtgcactatgttaatcaaaatagtc 29795258  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 36144969 - 36145028
Alignment:
Q  171 ttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaat 231  Q
    |||||| || |||||||||||||| ||| |||||||||| ||| ||||| |||||||||||    
T  36144969 ttataaggactgatatgacaataactaagtatattgaaaaactaatatg-acaatattaat 36145028  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 8161385 - 8161349
Alignment:
Q  179 attgatatgacaataaataaatatattgaaagactga 215  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8161385 attgatatgataataaataaatatattgaaagactga 8161349  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 31142090 - 31142041
Alignment:
Q  184 tatgacaataaataaatatattgaaagactgatatgaacaatattaatgaa 234  Q
    ||||||||||| |||||||||||||  ||||||||| ||||||||||||||    
T  31142090 tatgacaataagtaaatatattgaagtactgatatg-acaatattaatgaa 31142041  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 24084628 - 24084685
Alignment:
Q  27 tcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagt 84  Q
    ||||| |||||||||||||||||||||| ||| |||  ||||||||| | ||||||||    
T  24084628 tcaatgtatcaaaattttaaaatagtatttaaatatacactttgttagtcaaaatagt 24084685  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 998684 - 998652
Alignment:
Q  26 ttcaatatatcaaaattttaaaatagtatctaa 58  Q
    ||||||||||||||||||||||||| |||||||    
T  998684 ttcaatatatcaaaattttaaaataatatctaa 998652  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 6584327 - 6584359
Alignment:
Q  20 tagcccttcaatatatcaaaattttaaaatagt 52  Q
    |||||| ||||||||||||||||||||||||||    
T  6584327 tagcccctcaatatatcaaaattttaaaatagt 6584359  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 917085 - 917135
Alignment:
Q  179 attgatatgacaataaataaatatattgaaagactgatatgaacaatattaa 230  Q
    ||||||||||||| |||||||||||||||| |||| ||||| ||||||||||    
T  917085 attgatatgacaaaaaataaatatattgaatgactaatatg-acaatattaa 917135  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 22579560 - 22579466
Alignment:
Q  27 tcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtcaccgacgctaaaatacccccctcaatactcacaataa 122  Q
    ||||| |||||||||||||||||| |  || | |||  ||||||||||| ||||||||| | ||||||||||||   ||||||||||||| |||||    
T  22579560 tcaatgtatcaaaattttaaaataatccctgattatacactttgttaatcaaaatagtctcggacgctaaaata-atccctcaatactcaaaataa 22579466  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 3599976 - 3599942
Alignment:
Q  178 gattgatatgacaataaataaatatattgaaagac 212  Q
    ||||||||||||||||||||||||| |||||||||    
T  3599976 gattgatatgacaataaataaatatgttgaaagac 3599942  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 26675180 - 26675128
Alignment:
Q  181 tgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaa 235  Q
    |||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||    
T  26675180 tgatatgacaataaataagtatattgaaggact-atatg-acaatattaatgaaa 26675128  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 26946788 - 26946736
Alignment:
Q  181 tgatatgacaataaataaatatattgaaagactgatatgaacaatattaatgaaa 235  Q
    |||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||    
T  26946788 tgatatgacaataaataagtatattgaaggact-atatg-acaatattaatgaaa 26946736  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 24444454 - 24444393
Alignment:
Q  25 cttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtca 86  Q
    |||||||||||| |||||||||||| |||| | | | |||| ||||||||| ||||||||||    
T  24444454 cttcaatatatccaaattttaaaatggtatttgattgtgtattttgttaatcaaaatagtca 24444393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 14460072 - 14460120
Alignment:
Q  172 tataatgattgatatgacaataaataaatatattgaaagactgatatga 220  Q
    |||||| | |||||||||||||| ||||||||||||| |||| ||||||    
T  14460072 tataataactgatatgacaataagtaaatatattgaaggactaatatga 14460120  T

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Target: scaffold0687 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 1751 - 1703
Alignment:
Q  184 tatgacaataaataaatatattgaaagactgatatgaacaatattaatga 233  Q
    ||||||||||| |||||||||||||||| | ||||| |||||||||||||    
T  1751 tatgacaataagtaaatatattgaaagattaatatg-acaatattaatga 1703  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 7604067 - 7604019
Alignment:
Q  184 tatgacaataaataaatatattgaaagactgatatgaacaatattaatga 233  Q
    ||||||||||| |||||||||||||||| | ||||| |||||||||||||    
T  7604067 tatgacaataagtaaatatattgaaagattaatatg-acaatattaatga 7604019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 21600586 - 21600558
Alignment:
Q  134 tatggattgaaatgacaataagtaagtat 162  Q
    |||||||||||||||||||||||||||||    
T  21600586 tatggattgaaatgacaataagtaagtat 21600558  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 82877 - 82933
Alignment:
Q  29 aatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtc 85  Q
    |||||||||||||| ||||||||||||| | | | || ||||||||| |||||||||    
T  82877 aatatatcaaaattctaaaatagtatctgattgtatattttgttaatcaaaatagtc 82933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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