View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14789_low_1 (Length: 461)
Name: NF14789_low_1
Description: NF14789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14789_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 29648958 - 29649385
Alignment:
| Q |
19 |
atggtacgttatcgtaggcttcacgatgttgggtggaggattaagataacaaagatcaagagacagtttcttttcagtagagggactcaatcccttttgt |
118 |
Q |
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| T |
29648958 |
atggtacgttatcgtaggcttcacaatgttgggtggaggattaagataacaaagatcaagagacagtttcttttcagtagagggactcaatcccttttgt |
29649057 |
T |
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| Q |
119 |
tgaaagtaagccattacacgttgtttcaacacttgataagcactctgaactaaaatggtagcataagctcctgtgtcaaggataaaaccgccggatccat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
29649058 |
tgaaagtaagccattacacgttgtttcaacacttgataagcactctgaactaaaatggtagcataagctcctgtgtcgaggataaaaccaccggatccat |
29649157 |
T |
|
| Q |
219 |
ctgattttacttcgaatagtttagggtctattgggagcttattcccctccaaactgattcccttgcaaacaacatggtaatgtatcaatgttaagctgcc |
318 |
Q |
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| T |
29649158 |
ctgattttacttcgaatagtttagggtctattgggagcttattcccatccaaactgattcccttgcaaacaacatggtaatgtatcaatgttaagctgcc |
29649257 |
T |
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| Q |
319 |
tattgtcggcacaagtgacgttgttttgaagtctccgcttattttagcatcggggccaaaatgtaagtaattgtgtgactgtggatcgaggaattggcca |
418 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29649258 |
tattgtcggcacaagcgacgttgttttgaagtctccgcttattttagcatcggggccaaaatgtaagtaattgtgtgactgtggatcgaggaattggcca |
29649357 |
T |
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| Q |
419 |
aggcaataagagaaacgcatattggttt |
446 |
Q |
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| T |
29649358 |
aggcaataagagaaacgcatattggttt |
29649385 |
T |
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