View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14789_low_4 (Length: 320)
Name: NF14789_low_4
Description: NF14789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14789_low_4 |
 | |
|
| [»] scaffold0112 (2 HSPs) |
| | |
|
| [»] scaffold0093 (2 HSPs) |
| | |
|
| [»] scaffold0759 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 41 - 304
Target Start/End: Original strand, 26777981 - 26778244
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
26777981 |
atatacatacagaatgtggtgagcatgaagacagccaaagtaacaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttat |
26778080 |
T |
|
| Q |
141 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactatagctccctacgttaattat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26778081 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatacaagcagacactatagctccctacgttaattat |
26778180 |
T |
|
| Q |
241 |
taggaaaagtgaaatggctatatttaataatttatagagaggtccatataccaactgatactat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
26778181 |
taggaaaagtgaaatggctatatttaataatttatagagaggtccatatactaactgacactat |
26778244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 26791926 - 26791746
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26791926 |
atatacatacagaatgtggtgagcatgaagacagccaaattagcaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgt |
26791827 |
T |
|
| Q |
141 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
26791826 |
tatgaacttagcttagtgttgcattagttcattgttatatgcaagaatttatagagaggtgcatatactaactgacactat |
26791746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 41 - 304
Target Start/End: Complemental strand, 26729346 - 26729106
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
26729346 |
atatacatacagaatgtggtgagcatgaagacagccaaagtagcgagcttaacataagtcattctttgatcaaaataaagaataagctaaaattatttgt |
26729247 |
T |
|
| Q |
141 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactatagctccctacgttaattat |
240 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
26729246 |
gatgaacttagcttagtgt--------------------tgcaacaatttatagagaggtgcatatactagctggc---atagctccctacgttaattat |
26729170 |
T |
|
| Q |
241 |
taggaaaagtgaaatggctatatttaataatttatagagaggtccatataccaactgatactat |
304 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
26729169 |
taggaaaagtgaaatgtctatatttaataatttatagagaggtccatatactaactgacactat |
26729106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 26745493 - 26745318
Alignment:
| Q |
42 |
tatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgtt |
141 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26745493 |
tatacatacagaatatagtgagcatgaagacagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaagaataagct--aatcatttgtt |
26745396 |
T |
|
| Q |
142 |
atgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacact |
219 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||| |
|
|
| T |
26745395 |
atgaacttagctcagtattgcattagttcattgttacatgcaagaatttatacagaggtgcatatactaaccgacact |
26745318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 59 - 304
Target Start/End: Complemental strand, 26834529 - 26834300
Alignment:
| Q |
59 |
gtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgttatgaacttagcttagtg |
158 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
26834529 |
gtgagcatgaaaacagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgatatgaacttagcttagtg |
26834430 |
T |
|
| Q |
159 |
ttgcattagttcattgttacatgcaacaatttatagagaggtgcat----atactagcagacactatagctccctacgttaattattaggaaaagtgaaa |
254 |
Q |
| |
|
||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26834429 |
ttgta--------------------acaatttatagagaggtctatctatatactagcagacactatagctccctacgttaattgttaggaaaagtgaaa |
26834350 |
T |
|
| Q |
255 |
tggctatatttaataatttatagagaggtccatataccaactgatactat |
304 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
26834349 |
tggctatatttaacaatttatagagaggtccatataacaactgacactat |
26834300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 26756697 - 26756603
Alignment:
| Q |
210 |
agcagacactatagctccctacgttaattattaggaaaagtgaaatggctatatttaataatttatagagaggtccatataccaactgatactat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
26756697 |
agcagacactatagctccctacgttaattattaggaaaagtgaaatggctatatttaataatttatagagaggtccatatactaactgacactat |
26756603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 26729141 - 26729098
Alignment:
| Q |
186 |
aatttatagagaggtgcatatactagcagacactatagctccct |
229 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
26729141 |
aatttatagagaggtccatatactaactgacactatagctccct |
26729098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 41 - 304
Target Start/End: Original strand, 17469 - 17732
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgt |
140 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17469 |
atatacatacaaaatatggtgagcatgaagacagccaaagtaacaagtttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgt |
17568 |
T |
|
| Q |
141 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactatagctccctacgttaattat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17569 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaaaaatttatagagaggtgcgtatactagcagacactatagctccctacgttaattgt |
17668 |
T |
|
| Q |
241 |
taggaaaagtgaaatggctatatttaataatttatagagaggtccatataccaactgatactat |
304 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17669 |
taggaaaagtgaaatgtctatatttaataatttatagagaggtccatataccaactgacactat |
17732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 41 - 304
Target Start/End: Original strand, 26176 - 26445
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgt----ttgatcaaaagaaagaataagctaaaataat |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || | |||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
26176 |
atatacatacagaatgtggtgagcatgaagacagccgaagtaacaagcttaacataagtcattgtttgtttgatcaaaagaaagaataagctaaaattat |
26275 |
T |
|
| Q |
137 |
ttgttatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactatagctccctacgttaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26276 |
ttgttatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactatagctccctacgttaa |
26375 |
T |
|
| Q |
237 |
ttattaggaaaagtgaa--atggctatatttaataatttatagagaggtccatataccaactgatactat |
304 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
26376 |
ttatttggaaaagtgaaatatgcctatatttaataatttatagagaggtccatatactaactgacactat |
26445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 41 - 304
Target Start/End: Complemental strand, 20900 - 20639
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
20900 |
atatacatacagaatgtggtgagcatgaagacagccaaagtaacaagcttaacataagtcattgtttgatcaaaagaaataataagctaaaattatttgt |
20801 |
T |
|
| Q |
141 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactatagctccctacgttaattat |
240 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20800 |
tatgaacttagcttagtgttgcattaattccttgttacatgcaacaatttat--agaggtccatatactagcagacactatagctccctacgttaattat |
20703 |
T |
|
| Q |
241 |
taggaaaagtgaaatggctatatttaataatttatagagaggtccatataccaactgatactat |
304 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20702 |
taggaaaaaagaaatggctatatttaacaatttatagagaggtccatataccaactgacactat |
20639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 20677 - 20631
Alignment:
| Q |
183 |
aacaatttatagagaggtgcatatactagcagacactatagctccct |
229 |
Q |
| |
|
|||||||||||||||||| ||||||| | | |||||||||||||||| |
|
|
| T |
20677 |
aacaatttatagagaggtccatataccaactgacactatagctccct |
20631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 39 - 304
Target Start/End: Complemental strand, 2117 - 1866
Alignment:
| Q |
39 |
atatatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacata--agtcattgtttgatcaaaagaaagaataagctaaaataat |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
2117 |
atatatacatacagaatgtggtgagcatgaagacagccaaagtaacgagcttaacatataagtcattgtttgatcaaaataaagaataagctaaaattat |
2018 |
T |
|
| Q |
137 |
ttgttatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagagg----tgcatatactagcagacactatagctccctacg |
232 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| |||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
2017 |
ttgttatgaacttagcttagt-------------attgt-------aacaatttgtagagaggtctatctatatactagcagacactatagctccctacg |
1938 |
T |
|
| Q |
233 |
ttaattattaggaaaagtgaaatggctatatttaataatttatagagaggtccatataccaactgatactat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
1937 |
ttaattattaggaaaagtgaaatggctatgtttaataatttatagaggggtccatatactaactgacactat |
1866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 41 - 193
Target Start/End: Complemental strand, 17516 - 17364
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgt |
140 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17516 |
atatacatacagaatatggtgagcatgaagacagccaaagtagagagcttaacataagacattgtttgatcaaaagaaagaataagctaaaattatttga |
17417 |
T |
|
| Q |
141 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttata |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17416 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttata |
17364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 304
Target Start/End: Original strand, 7699 - 7944
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
7699 |
atatacatacagaatgtggtgagcatgaagacagccaaattagcaagcttaacataagtcattgtttgatcaaaataaagaataagttaaaattatttgt |
7798 |
T |
|
| Q |
141 |
tatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagagg----tgcatatactagcagacactatagctccctacgttaa |
236 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| | ||||||||||||||||||||||||||||| |||| |
|
|
| T |
7799 |
tatgaacttagcttagt-------------attgt-------aacaatttgtagagaggtctatctatatactagcagacactatagctccctactttaa |
7878 |
T |
|
| Q |
237 |
ttattaggaaaagtgaaatggctatatttaataatttatagagaggtccatataccaactgatactat |
304 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
7879 |
ttattaggaaaagtgaaatggctatgtttaataatttat--agaggtccatatactaactgacactat |
7944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 13042277 - 13042396
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgt |
140 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |
|
|
| T |
13042277 |
atatacatacagaatgtcgtgagcatgaaaacagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaataataagctaaaattatttat |
13042376 |
T |
|
| Q |
141 |
tatgaacttagcttagtgtt |
160 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13042377 |
tatgaacttagcttagtgtt |
13042396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 13050354 - 13050473
Alignment:
| Q |
41 |
atatacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgt |
140 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |
|
|
| T |
13050354 |
atatacatacagaatgtcgtgagcatgaaaacagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaataataagctaaaattatttat |
13050453 |
T |
|
| Q |
141 |
tatgaacttagcttagtgtt |
160 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13050454 |
tatgaacttagcttagtgtt |
13050473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 12109520 - 12109344
Alignment:
| Q |
43 |
atacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgtta |
142 |
Q |
| |
|
||||||||||| |||||| | || ||| | ||||||| || ||||||||||||||||||||||| |||| |||||||||| | |||| | |
|
|
| T |
12109520 |
atacatacagagtgtggtaaccaggaatagagccaaagtaatgagcttaacataagtcattgtttaatcagaagaaagaatta----------tttgaaa |
12109431 |
T |
|
| Q |
143 |
tgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactatagctccct |
229 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||| | ||||| || ||||| |
|
|
| T |
12109430 |
tgaacttagcttattgttgcattagttcattgttacatgcatcaatttatagagcggtccatttactagctggcactacagttccct |
12109344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 12127305 - 12127213
Alignment:
| Q |
135 |
atttgttatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactatagctcc |
227 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||| |||||| |||||||||||| | ||||| ||||||| ||||||| |||||| |
|
|
| T |
12127305 |
atttgttatgaacttatcttgttgttgcattagttcattgttgcatgcatcaatttatagagcgatgcatttactagctgacactacagctcc |
12127213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 30137372 - 30137451
Alignment:
| Q |
43 |
atacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa |
122 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30137372 |
atacatacagaatgcggcaagcaagaagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa |
30137451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 30143501 - 30143580
Alignment:
| Q |
43 |
atacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa |
122 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30143501 |
atacatacagaatgcggcaagcaagaagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa |
30143580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 30146923 - 30147002
Alignment:
| Q |
43 |
atacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa |
122 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30146923 |
atacatacagaatgcggcaagcaagaagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa |
30147002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 30069313 - 30069394
Alignment:
| Q |
43 |
atacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaata |
124 |
Q |
| |
|
|||||||||||||| || |||| ||||||||| ||| ||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
30069313 |
atacatacagaatgcggcaagcaagaagacagcaaaaggagctagcttaacataagccattgattgatcaaaagaaagaata |
30069394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 30132554 - 30132633
Alignment:
| Q |
43 |
atacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa |
122 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30132554 |
atacatacagaatgcggcaagcataaagacagcaaaaggagcaagcttaacataagtcattgttctatcaaaagaaagaa |
30132633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 35162626 - 35162547
Alignment:
| Q |
43 |
atacatacagaatgtggtgagcatgaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa |
122 |
Q |
| |
|
|||||||||||||| | ||| | ||||||| | ||| ||| ||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
35162626 |
atacatacagaatgcagcgagtaagaagacaacgaaaggagcaagcttaacagaagccattgtttgatcaaaagaaagaa |
35162547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 10621936 - 10622008
Alignment:
| Q |
73 |
agccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgttatga |
145 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| |||||| |||||||||| |||| ||| ||||||||||| |
|
|
| T |
10621936 |
agccaaaggagcgtgcttaacgtaagtcattgcttgatcgaaagaaagaactggctacaattatttgttatga |
10622008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 15126350 - 15126410
Alignment:
| Q |
86 |
agcttaacataagtcattgtttgatcaaaagaaagaataagctaaaataatttgttatgaa |
146 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| |
|
|
| T |
15126350 |
agcttaacataagccattgtttgatccaaagaaaaaacaagcttcaattgtttgttatgaa |
15126410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University