View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14789_low_5 (Length: 248)
Name: NF14789_low_5
Description: NF14789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14789_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 41309728 - 41309951
Alignment:
| Q |
20 |
gcaccaagatttattcattgatagattatatttagtgagtttgaagagttttgtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctga |
119 |
Q |
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| T |
41309728 |
gcaccaagatttattcatcgatagattatatttagtgagtttgaagagttttgtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctga |
41309827 |
T |
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| Q |
120 |
gaattatcttcttgacggcataatttatcttgggaattttctgcgaagaacatagaggatactacactagttatattgataattgcaatttaaatggaaa |
219 |
Q |
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| T |
41309828 |
gaattatcttcttcacggtataatttatcttgggaattttctgcgaagaacatagaggat-----actagttatattgataattgcaatttaaatggaaa |
41309922 |
T |
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| Q |
220 |
caggacagagagcagaggatggaaaactt |
248 |
Q |
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| T |
41309923 |
caggacagagagcagaggatggaaaactt |
41309951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 41324452 - 41324557
Alignment:
| Q |
46 |
tatatttagtgagtttgaagagttttgtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttcttgacggcataattt |
145 |
Q |
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| T |
41324452 |
tatatatagtgagtttgaggagttttgtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatctttttcacagcatatttt |
41324551 |
T |
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| Q |
146 |
atcttg |
151 |
Q |
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| T |
41324552 |
atcttg |
41324557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 27656779 - 27656719
Alignment:
| Q |
72 |
gtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttctt |
132 |
Q |
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| T |
27656779 |
gtttaccttgcaaaagtaaaccccagaagagaagctttaatgtcctaaaaattatcttctt |
27656719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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