View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1478_high_13 (Length: 290)
Name: NF1478_high_13
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1478_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 35755566 - 35755301
Alignment:
| Q |
10 |
attatactggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaata |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35755566 |
attatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaacaata |
35755467 |
T |
|
| Q |
110 |
tggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtggg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35755466 |
tggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaaatggtggg |
35755367 |
T |
|
| Q |
210 |
agtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35755366 |
agtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaag |
35755301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 35760712 - 35760467
Alignment:
| Q |
10 |
attatactggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaata |
109 |
Q |
| |
|
||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| | |||| ||| ||||||| |||||||||| |
|
|
| T |
35760712 |
attatgctgctcagggatgggaatcgaaccaacatgaaaataatgaaacaaactcttgggaacagtatcgtgctcctgttgttgaacattcaaaagaata |
35760613 |
T |
|
| Q |
110 |
tggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtggg |
209 |
Q |
| |
|
|||||||| |||| | || ||||||| ||| | |||| ||||| |||||| ||||||| ||||||||||||||||| | |||||||||| ||| ||| |
|
|
| T |
35760612 |
tggttggcgaaatggccaaaatgattatcatggatggaatcagacggagcaatatggtgctgacttgcataacaagt---atcaaggaagaaatggcggg |
35760516 |
T |
|
| Q |
210 |
agtgggaattggggaacatgggatggatatagcagaaggagagaaaaca |
258 |
Q |
| |
|
||| ||||||||| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
35760515 |
catggaaattggggagcatgggatggatataacagaaagagagaaaaca |
35760467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 54 - 265
Target Start/End: Complemental strand, 35785648 - 35785440
Alignment:
| Q |
54 |
gaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcaga |
153 |
Q |
| |
|
|||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35785648 |
gaaacaaactcttgggaacagtatcatgctcctgttgatgaacatgcaaaagaatatgggtggaaaaatagtcagaatgattctcagaggtggattcaga |
35785549 |
T |
|
| Q |
154 |
gggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagaga |
253 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | | |||||||||| |||| ||| | | ||||||| |||||||||||| |||| ||||| |||||| |
|
|
| T |
35785548 |
gggagaactatggtggcaacttgcataacaaat---atcaaggaagaaatggttggaatagtaattgggcaacatgggatgggtataacagaaagagaga |
35785452 |
T |
|
| Q |
254 |
aaacaacatgtc |
265 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
35785451 |
aaacaagatgtc |
35785440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 35766178 - 35765933
Alignment:
| Q |
24 |
ggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaata |
123 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||||| ||||||| ||| || | ||||| ||| ||||||||||||||| ||| ||||| |
|
|
| T |
35766178 |
ggatgggaattgaaccaacatgaaaatgatgaaacaaactcctgggaacgttattgggcttctgttgataaacgtgcaaaagaatatggatggaaaaatg |
35766079 |
T |
|
| Q |
124 |
gtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattgggg |
223 |
Q |
| |
|
| || ||| ||||||| ||| ||||||||||||||| || |||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
35766078 |
ggcagaataattctcaaaggcggattcagagggagcgctttggtggcaacttgcataacaagtatcaa---ggaagaaatggtgggagtgggaattgggg |
35765982 |
T |
|
| Q |
224 |
aacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaag |
275 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
35765981 |
aacatgggatggatataacagaaggagag---acaacatgtcatggtctaag |
35765933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 35799145 - 35798889
Alignment:
| Q |
10 |
attatactggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaata |
109 |
Q |
| |
|
||||| ||| || |||||| |||||||| ||||||||||||||||||||||||| || ||||| |||| | | || |||| | |||||||||| | |
|
|
| T |
35799145 |
attatgctgctctgggatgcgaatcaaaccaacatgaaaataatgaaacaaacttatgtgaacagtatcatgcgcccgttgaacatgctgcaaaagaaca |
35799046 |
T |
|
| Q |
110 |
tggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtggg |
209 |
Q |
| |
|
||| ||||||||| |||| |||||||||||| | |||| ||||||||||| |||||||||||||| |||||||||| | |||||||||| | |
|
|
| T |
35799045 |
tggatggcaaaatggtcagaatgattctcagggatggaatcagagggagcgatatggtggtgactttcataacaagt---atcaaggaagaaat------ |
35798955 |
T |
|
| Q |
210 |
agtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaag |
275 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |
|
|
| T |
35798954 |
agtggaaattggggaacatgggatggatataacagaaagaaagaaaacaacatgtcttggtctaag |
35798889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 35789504 - 35789263
Alignment:
| Q |
23 |
gggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaat |
122 |
Q |
| |
|
|||||||||||| || ||||||| |||||| ||| ||||| |||| |||| ||| | |||| ||||| | ||||||||||||||| ||| ||||| |
|
|
| T |
35789504 |
gggatgggaatcgaaccaacatggaaataaccaaaaaaacttttggaaacagtatgatgctcccattgaacatgctgcaaaagaatatggatggaaaaat |
35789405 |
T |
|
| Q |
123 |
agtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggg |
222 |
Q |
| |
|
|||| ||||||||||| | |||| |||||||||||| |||||||||||||| |||||||||| | |||||||||| | ||||| ||||||| |
|
|
| T |
35789404 |
ggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagt---atcaaggaagaaat------agtggaaattggg |
35789314 |
T |
|
| Q |
223 |
gaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtcta |
273 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
35789313 |
ggacatgggatggatataacagaaggagagaaaacaacatatcatggtcta |
35789263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University