View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1478_high_3 (Length: 551)

Name: NF1478_high_3
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1478_high_3
NF1478_high_3
[»] chr2 (5 HSPs)
chr2 (19-544)||(19947563-19948073)
chr2 (48-109)||(8520384-8520445)
chr2 (45-111)||(3985432-3985498)
chr2 (45-115)||(4162052-4162121)
chr2 (44-118)||(34143082-34143156)
[»] chr6 (3 HSPs)
chr6 (45-118)||(34105392-34105465)
chr6 (19-118)||(16437926-16438027)
chr6 (45-107)||(20970445-20970507)
[»] chr3 (5 HSPs)
chr3 (45-109)||(3968588-3968652)
chr3 (45-109)||(4000153-4000217)
chr3 (45-87)||(7170889-7170931)
chr3 (45-113)||(19206168-19206235)
chr3 (50-106)||(24099368-24099424)
[»] chr7 (2 HSPs)
chr7 (45-115)||(27993568-27993638)
chr7 (77-118)||(41089777-41089818)
[»] chr4 (4 HSPs)
chr4 (64-118)||(12470049-12470103)
chr4 (64-118)||(12470618-12470672)
chr4 (77-118)||(53823450-53823491)
chr4 (64-116)||(12489818-12489870)
[»] chr1 (7 HSPs)
chr1 (45-115)||(13987600-13987670)
chr1 (48-118)||(15840941-15841011)
chr1 (47-120)||(32876653-32876726)
chr1 (75-115)||(17891520-17891560)
chr1 (48-118)||(22199990-22200060)
chr1 (45-107)||(41403038-41403100)
chr1 (50-118)||(24658913-24658981)
[»] scaffold0572 (1 HSPs)
scaffold0572 (45-107)||(6295-6357)
[»] scaffold0127 (1 HSPs)
scaffold0127 (45-107)||(31235-31297)
[»] scaffold0620 (1 HSPs)
scaffold0620 (53-118)||(3817-3882)
[»] chr8 (1 HSPs)
chr8 (45-98)||(12883569-12883622)
[»] scaffold0157 (1 HSPs)
scaffold0157 (64-116)||(30607-30659)
[»] scaffold0036 (2 HSPs)
scaffold0036 (45-85)||(64356-64395)
scaffold0036 (45-85)||(69497-69536)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Complemental strand, 19948073 - 19947563
Alignment:
19 tatggtatcttctcgtgtgagatggaagttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||| ||||||    
19948073 tatggtatcttctcgtgtgagatggaagttgaggggtgccttagtgatttgtttctggagtctgacagaccaatcgcttttgcttcgagattgagagtca 19947974  T
119 ctctataggctcaagtttagggcttgtttggcgtattctccgacaaactgagggtggattggtggtggaatccatatttagaataagcagttttcagttg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
19947973 ctctataggctcaagtttagggcttgtttggcgtattctccgacaaactgagggtggattggtggtggaatccaaatttagaataagcagttttcagttg 19947874  T
219 tttatttgggctctactttgaaagagaacttaaggtgcttttataggcgttttgatcggtattttgattttttggaggggttttcttgcaagtagcggga 318  Q
    |||||||||||||||||||||||||||| ||||||| ||||       ||||        ||||||||||||||||||||||||||||||||||||||||    
19947873 tttatttgggctctactttgaaagagaatttaaggtacttt-------gttt--------attttgattttttggaggggttttcttgcaagtagcggga 19947789  T
319 tttgaaactatcttttgtggttcttcgcattggagattgaggatttgggccaaatttggtttatgttggtatgtggaggtatgactttgattttggtgct 418  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||    
19947788 tttgaaactatcttttgtggttcttcgcgttggagattgaggatttgggccaaatttggtttatattggtatgtggagctttgactttgattttggtgct 19947689  T
419 ggctttgattttgtattgatttttggtggtagccttgagtagggaagtgtctttgttggtgttttgatattcgaaatgtataagatttcttttgggtgtt 518  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||  ||||||||||||||||||||||||    
19947688 ggctttgattttgtgttgatttttggtggtatccttgagtagggaagtgtctttgttgctgttttgatgttcgaggtgtataagatttcttttgggtgtt 19947589  T
519 ttgcccatatactacgtcctttgctt 544  Q
     |||| |||||| |||||||||||||    
19947588 ctgcctatataccacgtcctttgctt 19947563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 8520384 - 8520445
Alignment:
48 tgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagat 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
8520384 tgaggggtgccttagtgatttgtttctagagtctgatggaccaatcacttttgattcgagat 8520445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 3985432 - 3985498
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattg 111  Q
    |||||||| |||||||||||||||| || |||||| ||||||  | ||||||||||||| |||||||    
3985432 agttgaggagtgccttagtgatttgcttatggagtttgatggggcgatcacttttgctttgagattg 3985498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 4162121 - 4162052
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggag 115  Q
    ||||||||||||||| |||||||||| |  |||||||| ||| || |||||||||| |||||||| |||||    
4162121 agttgaggggtgcct-agtgatttgtgttgggagtctggtgggccgatcacttttgattcgagatcgggag 4162052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 34143156 - 34143082
Alignment:
44 aagttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    |||||||||||||  |||||||||| ||| ||||||||| ||  || |||||||||||||| |||| || |||||    
34143156 aagttgaggggtgttttagtgatttttttttggagtctggtgagccgatcacttttgcttctagatcggaagtca 34143082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 34105392 - 34105465
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    |||||| ||||||||||||||||||||||| |||| || ||| || |||||||||| |||||||| ||||||||    
34105392 agttgaagggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtca 34105465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 16438027 - 16437926
Alignment:
19 tatggtatcttctcgtgtgagatggaagtt--gaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagt 116  Q
    |||||| | ||||| ||||||||| |||||  ||||| |||||||||||||||||| | || |||| |||||| | || |||||||| ||||| || |||    
16438027 tatggtgtattctcttgtgagatgaaagttttgagggatgccttagtgatttgtttatagattctggtggaccgaccatttttgctttgagatcggaagt 16437928  T
117 ca 118  Q
    ||    
16437927 ca 16437926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 20970507 - 20970445
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgag 107  Q
    |||||||||||| ||||||||||||||||| ||||||| ||  || ||||| |||| ||||||    
20970507 agttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgag 20970445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 3968652 - 3968588
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagat 109  Q
    ||||||||||||||||  |||||||| || |||||||| |||||||||| |||||||||||||||    
3968652 agttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagat 3968588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 4000153 - 4000217
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagat 109  Q
    ||||||||||||||||  |||||||| || |||||||| |||||||||| |||||||||||||||    
4000153 agttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagat 4000217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 7170931 - 7170889
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatgga 87  Q
    |||||||||||||||||||||||||||| || ||||| |||||    
7170931 agttgaggggtgccttagtgatttgtttttgaagtctaatgga 7170889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 19206168 - 19206235
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattggg 113  Q
    ||||||||||| ||||| |||| |  || |||||| |||||||||||| ||||||| ||||||||||||    
19206168 agttgaggggtacctta-tgatatacttttggagtatgatggaccaataacttttgattcgagattggg 19206235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 24099424 - 24099368
Alignment:
50 aggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcga 106  Q
    |||||||||||| |||||||||| | ||||||| ||| || |||||||||| |||||    
24099424 aggggtgccttaatgatttgtttatagagtctggtgggccgatcacttttgattcga 24099368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 27993638 - 27993568
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggag 115  Q
    |||||||||||| |||  |||||||| || |||||||| |||||| |||||||||| |||||||| |||||    
27993638 agttgaggggtgtctttatgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcgggag 27993568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 41089818 - 41089777
Alignment:
77 agtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    |||||| |||||| |||||||||| |||||||||||||||||    
41089818 agtctggtggaccgatcacttttgattcgagattgggagtca 41089777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 12470049 - 12470103
Alignment:
64 gatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    ||||||||| ||||||||| ||  ||||||| |||||||||||||||||||||||    
12470049 gatttgtttatggagtctggtgtgccaatcaattttgcttcgagattgggagtca 12470103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 12470618 - 12470672
Alignment:
64 gatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    ||||||||| ||||||||| ||  ||||||| |||||||||||||||||||||||    
12470618 gatttgtttatggagtctggtgtgccaatcaattttgcttcgagattgggagtca 12470672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 53823491 - 53823450
Alignment:
77 agtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
53823491 agtctggtggaccaatcacttttgattcgagatcgggagtca 53823450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 12489818 - 12489870
Alignment:
64 gatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagt 116  Q
    ||||||||| ||||||||  ||  ||||||| |||||||||||||||||||||    
12489818 gatttgtttatggagtctagtgtgccaatcaattttgcttcgagattgggagt 12489870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 13987600 - 13987670
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggag 115  Q
    ||||||||||||||||  |||||||| || ||| |||| ||| |||||| ||||||||||||||| |||||    
13987600 agttgaggggtgccttgatgatttgtgtcgggaatctggtgggccaatcgcttttgcttcgagatcgggag 13987670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 15841011 - 15840941
Alignment:
48 tgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    |||||||| |||||| ||||||||||| ||||||| ||| |  |||||||||| |||||||| ||||||||    
15841011 tgaggggttccttagggatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtca 15840941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 32876726 - 32876653
Alignment:
47 ttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtcact 120  Q
    |||||||||||||||||||||||||| |||||| || |||  | |  ||||||| |||||||| ||||||||||    
32876726 ttgaggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcact 32876653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 17891520 - 17891560
Alignment:
75 ggagtctgatggaccaatcacttttgcttcgagattgggag 115  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
17891520 ggagtctgatggaccgatcacttttgattcgagattgggag 17891560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 22199990 - 22200060
Alignment:
48 tgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    ||||||||  |||| |||||||  |||||||||||||||||| |||||||||| ||| |||| | ||||||    
22199990 tgaggggtatcttactgatttgactctggagtctgatggaccgatcacttttgattcaagatcgagagtca 22200060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 41403100 - 41403038
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgag 107  Q
    |||||||||||| ||||||||||||||||| ||||||| ||  || ||||| |||| ||||||    
41403100 agttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgag 41403038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 24658913 - 24658981
Alignment:
50 aggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    ||||||||| |  ||||||| ||||  |||||| ||| ||||||||||||| |||||||| ||||||||    
24658913 aggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtca 24658981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 6357 - 6295
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgag 107  Q
    |||||||||||| ||||||||||||||||| ||||||| ||  || ||||| |||| ||||||    
6357 agttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgag 6295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 31235 - 31297
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgag 107  Q
    |||||||||||| ||||||||||||||||| ||||||| ||  || ||||| |||| ||||||    
31235 agttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgag 31297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 3817 - 3882
Alignment:
53 ggtgccttagtgatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagtca 118  Q
    ||||||| |||||||||||| | ||||||| ||| || |||| ||||| |||||||| ||||||||    
3817 ggtgcctcagtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtca 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 12883569 - 12883622
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatggaccaatcacttt 98  Q
    ||||||||||||||||| | |||||||| ||||||||| |||||| ||| ||||    
12883569 agttgaggggtgccttaataatttgtttatggagtctggtggaccgatcgcttt 12883622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 30659 - 30607
Alignment:
64 gatttgtttctggagtctgatggaccaatcacttttgcttcgagattgggagt 116  Q
    ||||||||| ||||||||  ||  ||||||| |||||||||||||||||||||    
30659 gatttgtttatggagtctagtgtgccaatcaattttgcttcgagattgggagt 30607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 64395 - 64356
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatg 85  Q
    |||||| |||||||| |||||||||||||||||||||||||    
64395 agttgaagggtgcct-agtgatttgtttctggagtctgatg 64356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 69536 - 69497
Alignment:
45 agttgaggggtgccttagtgatttgtttctggagtctgatg 85  Q
    |||||| |||||||| |||||||||||||||||||||||||    
69536 agttgaagggtgcct-agtgatttgtttctggagtctgatg 69497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University