View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1478_high_6 (Length: 364)
Name: NF1478_high_6
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1478_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 48 - 349
Target Start/End: Original strand, 3347845 - 3348158
Alignment:
| Q |
48 |
atggtccgcattttttcttaccaagaaatcatctctaaaatgtaaatgaaattgtaaatatcattaaa------caaatacaactaccatagacaataca |
141 |
Q |
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| T |
3347845 |
atggtccgcattttttcttaccaagaaatcatctctaaaatgtaaatcaagttgtaaatatcattaaaaacttacaaatacaactacgatagacaataaa |
3347944 |
T |
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| Q |
142 |
atttaaacatccacattattaaattcaaatatttttcgagacctcttcacagtcaacaactttaccttcagtagtatttttgttagttattacatagtat |
241 |
Q |
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| T |
3347945 |
atttaaacatccacattattaaattcaaatatttttcgagacctcttcacagtcaacaactttaccttgagtagtatttttgttagttattacatagtat |
3348044 |
T |
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| Q |
242 |
tctaaaaatatgaaaatataatttaaaagaaaatatgtatttgtttggcaagaataattttgtcat------tgattaaataaaataaacatagacaact |
335 |
Q |
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| T |
3348045 |
tctaaaaatatgaaaatataatttaaaagaaaatatgtatttgtttggcaagaataattttgtcatttaaagtgattaaataaaataaacatagacaaat |
3348144 |
T |
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| Q |
336 |
gatacgaccaagtt |
349 |
Q |
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| T |
3348145 |
gatacgaccaagtt |
3348158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3347761 - 3347810
Alignment:
| Q |
1 |
ggtatttgtcccagaaaaattcaaactctaacttaagtacttaaacaatg |
50 |
Q |
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| T |
3347761 |
ggtatttgtcccagaaaaattcaaactctaacttaaatatttaaacaatg |
3347810 |
T |
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