View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1478_high_7 (Length: 356)
Name: NF1478_high_7
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1478_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 41034002 - 41033669
Alignment:
| Q |
14 |
caaatattacattaaaaacattatactgagatccacttttctcaaatccatctaaaaatttagctcgagtatcagattaaagttaccgcaacagcactga |
113 |
Q |
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| T |
41034002 |
caaatattacattaaaaacattatactgagatccacttttctcaaatccatctaaaaatttagctcgagtatcagattaaagttaccgcaacagcactga |
41033903 |
T |
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| Q |
114 |
gcttgttattccaataaaacaccccattgtctaaatttgtttcatctttctttgctgatnnnnnnn-ttgagttgcatttgcaagataatcagtgttttt |
212 |
Q |
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| T |
41033902 |
gcttgttattccaataaaacacccctttgtctaaatttgtttcatctttctttgctgataaaaaaaattgagttgcatttgcaagataatcagtgttttt |
41033803 |
T |
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| Q |
213 |
agtagcaagaaacaaccaagtagctccccaagccaactcatctttgtaactagttgagttataaagcattcttgcttgttttccacatgcatcaacagcg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41033802 |
agtagcaagaaacaaccaagtagctccccaagccaactcatctttgtaactagttgagttataaagcattcttgcttgttttccacatgcatcaacagcg |
41033703 |
T |
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| Q |
313 |
gtgtaggttccttgcttcttagggtcttcctttg |
346 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41033702 |
gtgtaggttccttgcttcttagggtcttcctttg |
41033669 |
T |
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