View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1478_high_8 (Length: 330)
Name: NF1478_high_8
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1478_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 33558123 - 33557821
Alignment:
| Q |
18 |
tgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaataacaggagcatagaataga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33558123 |
tgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaataacaggagcatagaataga |
33558024 |
T |
|
| Q |
118 |
atagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaatggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33558023 |
atagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaatggat |
33557924 |
T |
|
| Q |
218 |
tcttaatagattttgcttctctgctagcctcaataagatcatcaaattcagcgtcaacatttctggttcctctaatcttttccaacactactcttccttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33557923 |
tcttaatagattttgcttctctgctagcctcaataagatcatcaaattcagcatcaacatttctggttcctctaatcttttccaacactactcttccttc |
33557824 |
T |
|
| Q |
318 |
atc |
320 |
Q |
| |
|
||| |
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| T |
33557823 |
atc |
33557821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 33565340 - 33565038
Alignment:
| Q |
18 |
tgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaataacaggagcatagaataga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33565340 |
tgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgccccagagccaaatccaattgtttggaaaataacaggagcatagaataga |
33565241 |
T |
|
| Q |
118 |
atagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaatggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33565240 |
atagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaatggat |
33565141 |
T |
|
| Q |
218 |
tcttaatagattttgcttctctgctagcctcaataagatcatcaaattcagcgtcaacatttctggttcctctaatcttttccaacactactcttccttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33565140 |
tcttaatagattttgcttctctgctagcctcaataagatcatcaaattcagcatcaacatttctggttcctctaatcttttccaacactactcttccttc |
33565041 |
T |
|
| Q |
318 |
atc |
320 |
Q |
| |
|
||| |
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|
| T |
33565040 |
atc |
33565038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 43380485 - 43380229
Alignment:
| Q |
22 |
gcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaataacaggagcatagaatagaatag |
121 |
Q |
| |
|
||||||||||| |||| ||| || || ||||| ||||| ||||||||| |||| |||||||||| |||||||||| ||||| |||||||| || || | |
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| T |
43380485 |
gcaagaacaagtgcaatactagtgatgacagaagaataaagagatgcagcagatccaaatccaagagtttggaaaaggacaggtgcatagaagaggatgg |
43380386 |
T |
|
| Q |
122 |
agttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaatggattctt |
221 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||| | ||||||||| | ||||| |||||||||||||| ||||| || ||||||||||||||||| |
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| T |
43380385 |
agttgtttccagtcagttgttggaatgcaggaatagccaatgcaccaattacaaattgtggtctattctttcttaaaagaaggttctgaaatggattctt |
43380286 |
T |
|
| Q |
222 |
aatagattttgcttctctgctagcctcaataagatcatcaaattcagcgtcaacatt |
278 |
Q |
| |
|
|| | || |||||||||||| || |||| |||||| ||||||||||| |||||||| |
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|
| T |
43380285 |
gatggcttgtgcttctctgcttgcttcaacaagatcttcaaattcagcatcaacatt |
43380229 |
T |
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