View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1478_low_1 (Length: 626)

Name: NF1478_low_1
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1478_low_1
NF1478_low_1
[»] chr4 (11 HSPs)
chr4 (84-611)||(17080833-17081363)
chr4 (105-173)||(31785507-31785575)
chr4 (124-174)||(26332939-26332989)
chr4 (124-173)||(5261177-5261226)
chr4 (84-167)||(9483797-9483881)
chr4 (145-179)||(4404374-4404408)
chr4 (140-178)||(56564867-56564905)
chr4 (135-176)||(48084487-48084528)
chr4 (144-176)||(10565116-10565148)
chr4 (124-176)||(54997570-54997622)
chr4 (135-179)||(56453779-56453823)
[»] chr5 (8 HSPs)
chr5 (88-182)||(4348003-4348095)
chr5 (88-181)||(43405658-43405751)
chr5 (110-181)||(4592453-4592524)
chr5 (85-179)||(27428840-27428935)
chr5 (124-176)||(19179526-19179578)
chr5 (126-174)||(35623503-35623551)
chr5 (132-181)||(17247475-17247524)
chr5 (135-176)||(31156618-31156659)
[»] chr1 (8 HSPs)
chr1 (88-182)||(39426002-39426096)
chr1 (88-174)||(24339328-24339413)
chr1 (113-176)||(10776148-10776211)
chr1 (124-181)||(679993-680050)
chr1 (93-174)||(44483796-44483877)
chr1 (135-179)||(27982124-27982168)
chr1 (95-174)||(46608343-46608421)
chr1 (135-176)||(35534988-35535029)
[»] scaffold0284 (1 HSPs)
scaffold0284 (84-181)||(3203-3301)
[»] chr8 (7 HSPs)
chr8 (124-176)||(6148921-6148973)
chr8 (81-169)||(24557150-24557239)
chr8 (135-179)||(20169140-20169184)
chr8 (131-176)||(28403114-28403159)
chr8 (120-169)||(34746333-34746382)
chr8 (146-182)||(11452952-11452988)
chr8 (113-181)||(15901501-15901569)
[»] chr2 (6 HSPs)
chr2 (122-181)||(45446561-45446620)
chr2 (111-169)||(2358362-2358420)
chr2 (122-174)||(12949555-12949607)
chr2 (135-179)||(35315574-35315618)
chr2 (126-176)||(2522553-2522603)
chr2 (123-167)||(20108671-20108716)
[»] chr6 (1 HSPs)
chr6 (122-176)||(4048547-4048601)
[»] chr7 (10 HSPs)
chr7 (112-181)||(47270963-47271032)
chr7 (111-176)||(47456593-47456658)
chr7 (122-174)||(11828867-11828919)
chr7 (115-176)||(7712329-7712390)
chr7 (81-157)||(41401126-41401202)
chr7 (135-179)||(44390850-44390894)
chr7 (132-179)||(35207522-35207569)
chr7 (122-176)||(32916228-32916282)
chr7 (145-182)||(8014626-8014663)
chr7 (146-174)||(1193664-1193692)
[»] chr3 (3 HSPs)
chr3 (113-181)||(51982542-51982610)
chr3 (135-176)||(28792021-28792062)
chr3 (101-182)||(49341341-49341420)
[»] scaffold0121 (1 HSPs)
scaffold0121 (113-174)||(29533-29594)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 84 - 611
Target Start/End: Original strand, 17080833 - 17081363
Alignment:
Q  84 gactcactcaatggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactcac 183  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||| ||||||||||||||||     
T  17080833 gactcactcaatggtaggacccacatcctttttatgtatgtatctcgttgtaaatgacattctccatttatttttataaatgaagatgatcttaactcaa 17080932  T
Q  184 actcaatttttgtgttatgtctttgttttctatgtttaaactacatgattgattttgtttaattcaacaatgatgggattgctattgtaaaatgcaagcg 283  Q
    |||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||      
T  17080933 actcaaattttgtgttatgtctttgttttctatgcttaaactacgtgattgattttgtttagttcaacaatgatgggattgctattgtaaaatgcaagtt 17081032  T
Q  284 tggattt------gtctcatatttgttaacaatggaatgagatgggataaataaaacacatttgaaagtggaatatgggcgatcaagttacaatcaccta 377  Q
    |||||||      |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  17081033 tggatttgtgaaagtctcatatttgttaacagtggaatgagatgggataaataaaacacatttgaaagtggattatgtgcggtcaagttacaatcaccta 17081132  T
Q  378 ttcacagacat---atcaaaaccagacaattcagatcttaatatcttctttannnnnnnaaaatataaaattttgacttcaaaatcccaactatccaatc 474  Q
    |||||||||||   ||||||||||||||| ||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||      |    
T  17081133 ttcacagacatctgatcaaaaccagacaactcagatcttaatatcttctttacttttttaaaatttaaaattttgacttcaaaatcccaacta------c 17081226  T
Q  475 tcgatcggatgacctcgatttcgttgactacatatcatgagtgccaattgcacccaattcgaatccatataaacgttaaagtgtgaagatatagatacat 574  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||    
T  17081227 tcgatcggatgaccccgatttcgttgactacatattatgagtgccaattgcacccaattcggatccatataaacgttaaagtgtgtagatatagatatat 17081326  T
Q  575 tcaatgtcttcaattttaaactaagacatggtgtttg 611  Q
    ||||| |||||||||||||||||||||||||||||||    
T  17081327 tcaatctcttcaattttaaactaagacatggtgtttg 17081363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 31785575 - 31785507
Alignment:
Q  105 cacatcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgat 173  Q
    |||| ||||||| |||||||||||| || |||||| |||| |||||||||||||||||||| |||||||    
T  31785575 cacaacctttttgtgtatgtatctctttttaaatgccattctccatttatttttataaatgaagatgat 31785507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 26332989 - 26332939
Alignment:
Q  124 tatctcattctaaatggcattttccatttatttttataaatggagatgatc 174  Q
    |||||| ||||||||| |||| |||||||||||||||||||||||| ||||    
T  26332989 tatctctttctaaatgacattctccatttatttttataaatggagaggatc 26332939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 5261177 - 5261226
Alignment:
Q  124 tatctcattctaaatggcattttccatttatttttataaatggagatgat 173  Q
    |||||| |||||||| |||| ||||||||| |||||||||||||||||||    
T  5261177 tatctctttctaaattgcatcttccatttacttttataaatggagatgat 5261226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 9483797 - 9483881
Alignment:
Q  84 gactcactcaatggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccattta-tttttataaatgga 167  Q
    ||||||||||||| ||||| | |||  ||| || ||| | |||||| || |||||||||||||||||||| ||||||||||||||    
T  9483797 gactcactcaatgataggaccgacaatcttcttttgtgtatatctctttttaaatggcattttccatttattttttataaatgga 9483881  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 4404374 - 4404408
Alignment:
Q  145 ttccatttatttttataaatggagatgatcttaac 179  Q
    ||||||||||||||||||||||||| |||||||||    
T  4404374 ttccatttatttttataaatggagaggatcttaac 4404408  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 56564867 - 56564905
Alignment:
Q  140 gcattttccatttatttttataaatggagatgatcttaa 178  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  56564867 gcatcttccatttatttttataaatggagaggatcttaa 56564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 48084528 - 48084487
Alignment:
Q  135 aaatggcattttccatttatttttataaatggagatgatctt 176  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||    
T  48084528 aaatgacatcttccatttatttttataaatggagaggatctt 48084487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 10565148 - 10565116
Alignment:
Q  144 tttccatttatttttataaatggagatgatctt 176  Q
    |||||||||||||||||||||||||| ||||||    
T  10565148 tttccatttatttttataaatggagaggatctt 10565116  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 54997622 - 54997570
Alignment:
Q  124 tatctcattctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||||| ||| |||| |||  ||||||||||||||||||||||||| ||||||    
T  54997622 tatctctttccaaattgcaacttccatttatttttataaatggagaggatctt 54997570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 56453823 - 56453779
Alignment:
Q  135 aaatggcattttccatttatttttataaatggagatgatcttaac 179  Q
    |||| |||| |||||||||||| |||||||||||| |||||||||    
T  56453823 aaattgcatcttccatttatttctataaatggagaggatcttaac 56453779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 4348095 - 4348003
Alignment:
Q  88 cactcaatggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactca 182  Q
    ||||||||||||||| ||||| |||||||||||  ||||||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  4348095 cactcaatggtaggacccacaacctttttatgt--gtatctctttctaaatggcattctccatttatttttatatatggagaggatcttaactca 4348003  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 43405658 - 43405751
Alignment:
Q  88 cactcaatggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactc 181  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||||||  ||| |||||||||||||||  ||||||| |||||||||||    
T  43405658 cactcaatggtaggatccacaacctttttatgtgtgtatctctttctaaatgatattctccatttatttttattgatggagaggatcttaactc 43405751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 4592524 - 4592453
Alignment:
Q  110 cctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactc 181  Q
    ||||||||||| |||||||  || ||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  4592524 cctttttatgtgtgtatctatttttaaatggcattctccatttatttttataaatgaagaggatcttaactc 4592453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 27428935 - 27428840
Alignment:
Q  85 actcactcaatggtaggatccac-atcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaac 179  Q
    ||||||| ||||||||||| ||| |||  |||| ||| | |||||| ||| |||| |||| ||| ||||||||||||||||||||| |||||||||    
T  27428935 actcacttaatggtaggattcaccatctattttttgtgtctatctctttccaaattgcatcttctatttatttttataaatggagaggatcttaac 27428840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 19179526 - 19179578
Alignment:
Q  124 tatctcattctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||||| ||| |||| |||| ||||||||||||||||||||||||| ||||||    
T  19179526 tatctccttccaaatcgcatcttccatttatttttataaatggagaggatctt 19179578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 35623503 - 35623551
Alignment:
Q  126 tctcattctaaatggcattttccatttatttttataaatggagatgatc 174  Q
    |||| ||||||||| |||| |||||||||||||||||||||||| ||||    
T  35623503 tctctttctaaatgacattctccatttatttttataaatggagaggatc 35623551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 17247475 - 17247524
Alignment:
Q  132 tctaaatggcattttccatttatttttataaatggagatgatcttaactc 181  Q
    |||||||  ||| ||||||| ||||||||||||||||| |||||||||||    
T  17247475 tctaaattacatcttccattcatttttataaatggagaagatcttaactc 17247524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 31156618 - 31156659
Alignment:
Q  135 aaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||| |||| || |||||||||||||||||||||||||||||    
T  31156618 aaattgcatatttcatttatttttataaatggagatgatctt 31156659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 39426002 - 39426096
Alignment:
Q  88 cactcaatggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactca 182  Q
    ||||||||||||||| || || ||||||||||| || ||||  ||||||||| |||| || ||||||||||||||||||||| ||||||||||||    
T  39426002 cactcaatggtaggacccgcaacctttttatgtgtgcatctttttctaaatgacattctctatttatttttataaatggagaagatcttaactca 39426096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 24339413 - 24339328
Alignment:
Q  88 cactcaatggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatc 174  Q
    |||||||||||| || |||||  |||||| ||||||||| || ||||||||  |||| |||||||||||||||||||||||| ||||    
T  24339413 cactcaatggtatgacccacaatcttttt-tgtatgtatttctttctaaataacattctccatttatttttataaatggagaggatc 24339328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 10776148 - 10776211
Alignment:
Q  113 ttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||||||| | |||||| || ||||| |||| ||||||||||||||||||||||||| ||||||    
T  10776148 ttttatgtgtttatctctttttaaattgcatcttccatttatttttataaatggagaggatctt 10776211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 680050 - 679993
Alignment:
Q  124 tatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactc 181  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| ||| |||||| ||||    
T  680050 tatctctttctaaatgacattttctatttatttttataaatgaagaagatctttactc 679993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 44483796 - 44483877
Alignment:
Q  93 aatggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatc 174  Q
    |||||||||| |||||  |||||| | | |||| ||| |||||||||||||  |||||| ||||||||||||||||| ||||    
T  44483796 aatggtaggacccacaatctttttttttgtgtacctctttctaaatggcatcctccattaatttttataaatggagaggatc 44483877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 27982124 - 27982168
Alignment:
Q  135 aaatggcattttccatttatttttataaatggagatgatcttaac 179  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||    
T  27982124 aaattgcatcttccatttatttttataaatggagaggatcttaac 27982168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 46608421 - 46608343
Alignment:
Q  95 tggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatc 174  Q
    |||||||| ||||||| | ||| ||| |||||||| |||||||||||||  ||| |||||||| ||||||||||| ||||    
T  46608421 tggtaggacccacatcgtattt-tgtgtgtatctctttctaaatggcatcctccctttattttcataaatggagaggatc 46608343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 35534988 - 35535029
Alignment:
Q  135 aaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||| |||| ||||||||||||||||||||||||||| ||||    
T  35534988 aaattgcatcttccatttatttttataaatggagatggtctt 35535029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 3203 - 3301
Alignment:
Q  84 gactcactcaatggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccattta-tttttataaatggagatgatcttaactc 181  Q
    ||||||||||||| ||||||| ||   ||| || ||| |||||||||||||||||| |||||| |||||| |||||||||||||||| |||||| ||||    
T  3203 gactcactcaatgataggatcgactatcttcttttgtgtgtatctcattctaaatgacatttttcatttattttttataaatggagaggatctttactc 3301  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 6148973 - 6148921
Alignment:
Q  124 tatctcattctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  6148973 tatctctttctaaattgcatcttccatttatttttataaatggagatgatctt 6148921  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 24557239 - 24557150
Alignment:
Q  81 tgggactcactcaatggtaggatccacatcct-ttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggaga 169  Q
    ||||||||||| |||||||||| |||   ||| |||||||| | |||||| ||| |||| |||| |||||||||||||||||||||||||    
T  24557239 tgggactcacttaatggtaggacccattacctattttatgtctatatctctttccaaattgcatcttccatttatttttataaatggaga 24557150  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 20169140 - 20169184
Alignment:
Q  135 aaatggcattttccatttatttttataaatggagatgatcttaac 179  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||    
T  20169140 aaattgcatcttccatttatttttataaatggagaggatcttaac 20169184  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 28403159 - 28403114
Alignment:
Q  131 ttctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    ||||||||  ||| ||||||||||||||||||||| ||||||||||    
T  28403159 ttctaaattacatcttccatttatttttataaatgaagatgatctt 28403114  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 34746382 - 34746333
Alignment:
Q  120 tatgtatctcattctaaatggcattttccatttatttttataaatggaga 169  Q
    |||||||||| ||||||  |||| | ||||||||||||||||||||||||    
T  34746382 tatgtatctctttctaagaggcaatctccatttatttttataaatggaga 34746333  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 11452988 - 11452952
Alignment:
Q  146 tccatttatttttataaatggagatgatcttaactca 182  Q
    |||||||||||||||||||||||| |||| |||||||    
T  11452988 tccatttatttttataaatggagaggatcctaactca 11452952  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 15901501 - 15901569
Alignment:
Q  113 ttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactc 181  Q
    |||| ||||| |||||| |||  ||||||| | |||||||||||| ||||||| ||| |||||||||||    
T  15901501 ttttttgtatctatctctttcataatggcaatctccatttattttaataaatgaagaagatcttaactc 15901569  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 45446620 - 45446561
Alignment:
Q  122 tgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactc 181  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||| |||| ||||||    
T  45446620 tgtatctctttctaaatggcaatctccatttatttttataaatggagaggatcctaactc 45446561  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 2358420 - 2358362
Alignment:
Q  111 ctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggaga 169  Q
    |||||| ||||||||| || |||||||||  ||||||||||||||||||||||| ||||    
T  2358420 ctttttttgtatgtatatctttctaaatgagattttccatttatttttataaatagaga 2358362  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 12949555 - 12949607
Alignment:
Q  122 tgtatctcattctaaatggcattttccatttatttttataaatggagatgatc 174  Q
    |||||||| |||||||||| ||  |||||||||||||||||||||||| ||||    
T  12949555 tgtatctctttctaaatggtatcctccatttatttttataaatggagaggatc 12949607  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 35315574 - 35315618
Alignment:
Q  135 aaatggcattttccatttatttttataaatggagatgatcttaac 179  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||    
T  35315574 aaattgcatcttccatttatttttataaatggagaggatcttaac 35315618  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 2522553 - 2522603
Alignment:
Q  126 tctcattctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||| |||||||||||||  |||||||||||||||||||| ||| ||||||    
T  2522553 tctctttctaaatggcatgctccatttatttttataaatgaagaggatctt 2522603  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 20108671 - 20108716
Alignment:
Q  123 gtatctcattctaaatggcattttccattta-tttttataaatgga 167  Q
    ||||||| || |||||||||||||||||||| ||||||||||||||    
T  20108671 gtatctctttttaaatggcattttccatttattttttataaatgga 20108716  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 4048601 - 4048547
Alignment:
Q  122 tgtatctcattctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||    
T  4048601 tgtatctctttctaactggcatcttctatttatttttataaatggagatgatctt 4048547  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 47271032 - 47270963
Alignment:
Q  112 tttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactc 181  Q
    ||||| ||||||||||||  |||||||| |||| | |||||||||||||||||||||| |||||| ||||    
T  47271032 tttttttgtatgtatctctatctaaatgacattcttcatttatttttataaatggagaggatctttactc 47270963  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 47456658 - 47456593
Alignment:
Q  111 ctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||||| ||| |||||||| || |||||| |||| ||||||||||||| |||||||||||||||||    
T  47456658 ctttttttgtgtgtatctctttttaaatgacattctccatttatttttgtaaatggagatgatctt 47456593  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 11828919 - 11828867
Alignment:
Q  122 tgtatctcattctaaatggcattttccatttatttttataaatggagatgatc 174  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||||| ||||    
T  11828919 tgtatctctttctaaatggcattctccatttatttttataaacggagaggatc 11828867  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 7712390 - 7712329
Alignment:
Q  115 ttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||||| | ||||||  ||||||| |||| ||||||||||||||||||||||||| ||||||    
T  7712390 ttatgtctctatctctctctaaattgcatcttccatttatttttataaatggagaggatctt 7712329  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 41401202 - 41401126
Alignment:
Q  81 tgggactcactcaatggtaggatccacatcctttttatgtatgtatctcattctaaatggcattttccatttatttt 157  Q
    ||||||| ||||||| ||| || ||||| | ||||||||||||||| || ||||||||| || | ||||||||||||    
T  41401202 tgggacttactcaatagtatgacccacaacttttttatgtatgtatttctttctaaatgacagtctccatttatttt 41401126  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 44390850 - 44390894
Alignment:
Q  135 aaatggcattttccatttatttttataaatggagatgatcttaac 179  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||    
T  44390850 aaattgcatcttccatttatttttataaatggagaggatcttaac 44390894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 35207522 - 35207569
Alignment:
Q  132 tctaaatggcattttccatttatttttataaatggagatgatcttaac 179  Q
    ||||||| |||| ||| ||||||||||||||| |||||||||||||||    
T  35207522 tctaaattgcatattcgatttatttttataaacggagatgatcttaac 35207569  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 32916228 - 32916282
Alignment:
Q  122 tgtatctcattctaaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||||||| || ||||||||||  |  ||||||||||||||||||||||||||||    
T  32916228 tgtatctctttataaatggcatcctatatttatttttataaatggagatgatctt 32916282  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 8014663 - 8014626
Alignment:
Q  145 ttccatttatttttataaatggagatgatcttaactca 182  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  8014663 ttccatttatttttataaatgaagatgatctttactca 8014626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 1193692 - 1193664
Alignment:
Q  146 tccatttatttttataaatggagatgatc 174  Q
    |||||||||||||||||||||||||||||    
T  1193692 tccatttatttttataaatggagatgatc 1193664  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 51982610 - 51982542
Alignment:
Q  113 ttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactc 181  Q
    |||||||||| ||||||  || |||| |||| ||||||||||||||||||||||||| |||||| ||||    
T  51982610 ttttatgtatctatctctctccaaattgcatcttccatttatttttataaatggagaggatctttactc 51982542  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 28792021 - 28792062
Alignment:
Q  135 aaatggcattttccatttatttttataaatggagatgatctt 176  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  28792021 aaattgcatcttccatttatttttataaatggagatgatctt 28792062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 49341341 - 49341420
Alignment:
Q  101 gatccacatcctttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatcttaactca 182  Q
    |||||||| ||||||||| | ||||| || || |||||| |||| |||||||  ||||||||||||||| ||||||| ||||    
T  49341341 gatccacaacctttttatctgtgtatttctttttaaatgacattgtccattt--ttttataaatggagaggatcttacctca 49341420  T

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Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 29594 - 29533
Alignment:
Q  113 ttttatgtatgtatctcattctaaatggcattttccatttatttttataaatggagatgatc 174  Q
    |||||||| | ||||||  ||||||| || ||||||||||||||||||||||||||| ||||    
T  29594 ttttatgtctctatctctctctaaattgctttttccatttatttttataaatggagaggatc 29533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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