View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1478_low_16 (Length: 248)
Name: NF1478_low_16
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1478_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43399816 - 43400048
Alignment:
| Q |
1 |
gcaaaaggtatgttttgaacttatgatttggttaataggttccatttaaaatattctttgtaaatctttgttaccttgttttgcaattataaatgtggta |
100 |
Q |
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| T |
43399816 |
gcaaaaggtatgttttgaacttatgatttggttaataggttccatttaaaatattctttgtaagtctttgttaccttgttttgcaattataaatgtggta |
43399915 |
T |
|
| Q |
101 |
acacaacacttatccttgcagtaaaacttgctacgccaattttgcaatctcctagtccaggagtatcatcaaatgcagaaaaggaagcctctcgtgggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43399916 |
acacaacacttatccttgcagtaaaacttgctacgccaattttgcaatctcctagtccaggagtatcatcaaatgcagaaaaggaagcctctcgtgggaa |
43400015 |
T |
|
| Q |
201 |
aaacaagttcttcttggcaaggtggtttggatt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43400016 |
aaacaagttcttcttggcaaggtggtttggatt |
43400048 |
T |
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