View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1478_low_2 (Length: 609)

Name: NF1478_low_2
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1478_low_2
NF1478_low_2
[»] chr4 (5 HSPs)
chr4 (8-437)||(40011666-40012095)
chr4 (481-592)||(40012141-40012252)
chr4 (347-401)||(31053044-31053098)
chr4 (283-328)||(27763470-27763515)
chr4 (349-401)||(10355239-10355291)
[»] scaffold0245 (1 HSPs)
scaffold0245 (284-397)||(5659-5773)
[»] scaffold0229 (1 HSPs)
scaffold0229 (284-397)||(5989-6103)
[»] chr1 (5 HSPs)
chr1 (284-397)||(1279981-1280095)
chr1 (331-406)||(48252402-48252478)
chr1 (350-406)||(35120168-35120224)
chr1 (347-406)||(28016578-28016637)
chr1 (273-326)||(35120172-35120225)
[»] chr3 (3 HSPs)
chr3 (309-408)||(2973050-2973150)
chr3 (347-400)||(35970437-35970490)
chr3 (347-412)||(50888527-50888592)
[»] chr2 (4 HSPs)
chr2 (272-406)||(1465734-1465869)
chr2 (274-314)||(13292789-13292829)
chr2 (349-399)||(13056660-13056710)
chr2 (347-399)||(1465743-1465795)
[»] chr5 (2 HSPs)
chr5 (345-406)||(17358519-17358580)
chr5 (347-430)||(11649039-11649122)
[»] chr7 (3 HSPs)
chr7 (347-399)||(45429318-45429370)
chr7 (349-400)||(7465266-7465317)
chr7 (347-400)||(18358792-18358845)
[»] chr8 (1 HSPs)
chr8 (351-401)||(25487649-25487699)
[»] chr6 (2 HSPs)
chr6 (273-325)||(3245827-3245879)
chr6 (274-326)||(8514159-8514211)


Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 40011666 - 40012095
Alignment:
Q  8 gagcacagaggagacaaacttaagagggagagtttgattgagttgaaggaaatgtttcgtgagagaaaaatggatgaattgaaatgggtttttgaggatg 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011666 gagcacagaggagagaaacttaagagggagagtttgattgagttgaaggaaatgtttcgtgagagaaaaatggatgaattgaaatgggtttttgaggatg 40011765  T
Q  108 atattgaaattaacgaggtttggttcgatgaaaataacaatgggaaaaggaaaaagacgagtaagcgaagtgaggttcaggttgtgaggtttcttgttga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011766 atattgaaattaacgaggtttggttcgatgaaaataacaatgggaaaaggaaaaagacgagtaagcgaagtgaggttcaggttgtgaggtttcttgttga 40011865  T
Q  208 taggtttgcgttctgtttttcatttgctgtcaattcttttgggagttagttagtatgcattgctggtgtaaaattattttacacattcatccaatgacgt 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  40011866 taggtttgtgttctgtttttcatttgctgtcaattcttttgggagttagttagaatgcattgttggtgtaaaattattttacacattcatccaatgacgt 40011965  T
Q  308 attgtcatatcatttaatatcgttgaaaaaacatgagtatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaa 407  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011966 attgtcatatcatttaatgtggttgaaaaaacatgagtatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaa 40012065  T
Q  408 tgttagtttacgaaaattaaacttgattga 437  Q
    ||||||||||||||||||||||||||||||    
T  40012066 tgttagtttacgaaaattaaacttgattga 40012095  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 481 - 592
Target Start/End: Original strand, 40012141 - 40012252
Alignment:
Q  481 gtaggttgtgtgataaggaaattggggctaaggattggaaattttcgaggttgatgaagctgtctggattgtctttcacggagggtcagttgatgatgat 580  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40012141 gtaggttgtgtgataaggaaattagggctaaggattggaaattttcgaggttgatgaagctgtctggattgtctttcacggagggtcagttgatgatgat 40012240  T
Q  581 tattgaaatgct 592  Q
    ||||||||||||    
T  40012241 tattgaaatgct 40012252  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 31053044 - 31053098
Alignment:
Q  347 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 401  Q
    ||||||||||||||||||  |  ||||||||||||  ||||||||||||||||||    
T  31053044 tcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataatt 31053098  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 27763470 - 27763515
Alignment:
Q  283 attttacacattcatccaatgacgtattgtcatatcatttaatatc 328  Q
    ||||||||||| ||| ||| |||||||||||| |||||||||||||    
T  27763470 attttacacatgcattcaacgacgtattgtcacatcatttaatatc 27763515  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 10355291 - 10355239
Alignment:
Q  349 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 401  Q
    |||||||||||||||||||  || |||| ||||| ||||| ||||||||||||    
T  10355291 atattcattaattgacatgacaaaacatgattgaatgcatatgtaaaataatt 10355239  T

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Target: scaffold0245 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 397
Target Start/End: Complemental strand, 5773 - 5659
Alignment:
Q  284 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 381  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  5773 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 5675  T
Q  382 agtgcatgtgtaaaat 397  Q
     |||||||||||||||    
T  5674 ggtgcatgtgtaaaat 5659  T

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Target: scaffold0229 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 397
Target Start/End: Complemental strand, 6103 - 5989
Alignment:
Q  284 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 381  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  6103 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 6005  T
Q  382 agtgcatgtgtaaaat 397  Q
     |||||||||||||||    
T  6004 ggtgcatgtgtaaaat 5989  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 397
Target Start/End: Complemental strand, 1280095 - 1279981
Alignment:
Q  284 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 381  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  1280095 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 1279997  T
Q  382 agtgcatgtgtaaaat 397  Q
     |||||||||||||||    
T  1279996 ggtgcatgtgtaaaat 1279981  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 406
Target Start/End: Complemental strand, 48252478 - 48252402
Alignment:
Q  331 tgaaaaaacatgagt-atcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 406  Q
    |||||| |||||||| |||||||| |||||||||  ||||||||||||||||| || ||||||||||| ||| ||||    
T  48252478 tgaaaatacatgagttatcatatttattaattgatgtggaaacacatcattgaatgtatgtgtaaaattattgtaca 48252402  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 35120168 - 35120224
Alignment:
Q  350 tattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 406  Q
    |||| |||||||||||||| || |||||||||  |||||||||||||||| ||||||    
T  35120168 tatttattaattgacatggcaatacatcattggatgcatgtgtaaaataactttaca 35120224  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 28016637 - 28016578
Alignment:
Q  347 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 406  Q
    |||||||| |||||||| |||  ||||||||||||| || ||||||||||||||| ||||    
T  28016637 tcatattcgttaattgaaatgacaacacatcattgaatgtatgtgtaaaataattgtaca 28016578  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 35120225 - 35120172
Alignment:
Q  273 gtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaata 326  Q
    ||||||| ||||||||||||| |||||||||| |||||| ||| ||| ||||||    
T  35120225 gtgtaaagttattttacacatgcatccaatgatgtattgccatgtcaattaata 35120172  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 408
Target Start/End: Complemental strand, 2973150 - 2973050
Alignment:
Q  309 ttgtcatatcatttaatatcgttgaaaaaacatgagta-tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaa 407  Q
    |||||| |||||||||||| |||||||| |||||| |  ||||||||||| |||||| || ||||| || ||| | ||||  ||||||||||||||||||    
T  2973150 ttgtcacatcatttaatatggttgaaaatacatgatttgtcatattcattgattgacgtgaaaacatattattaaatgcaaatgtaaaataattttacaa 2973051  T
Q  408 t 408  Q
    |    
T  2973050 t 2973050  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 35970490 - 35970437
Alignment:
Q  347 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 400  Q
    |||||||||||||||||| ||  ||||||| ||||| |||||||||||||||||    
T  35970490 tcatattcattaattgacgtgacaacacatgattgaatgcatgtgtaaaataat 35970437  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 50888592 - 50888527
Alignment:
Q  347 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgtta 412  Q
    |||||||||||||||||| | | || ||||||||   | ||||||||||||||||||||| |||||    
T  50888592 tcatattcattaattgacgttgtaagacatcatttgatacatgtgtaaaataattttacattgtta 50888527  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 406
Target Start/End: Original strand, 1465734 - 1465869
Alignment:
Q  272 ggtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatattcattaattgacatggaa 370  Q
    |||||| | ||||||||||||| |||||||||| || ||||||  ||| ||||||    |||||| ||| ||||  ||||||| || || |||  |||||    
T  1465734 ggtgtacagttattttacacatgcatccaatgatgtgttgtcacgtcaattaataaatatgaaaacacacgagttgtcatattgatcaaatgatgtggaa 1465833  T
Q  371 acacatcattgagtgcatgtgtaaaataattttaca 406  Q
    |||||||||||  |||||||||||||||||| ||||    
T  1465834 acacatcattggatgcatgtgtaaaataattgtaca 1465869  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 13292789 - 13292829
Alignment:
Q  274 tgtaaaattattttacacattcatccaatgacgtattgtca 314  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  13292789 tgtaaaattattttacacattcattcaatgatgtattgtca 13292829  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 399
Target Start/End: Original strand, 13056660 - 13056710
Alignment:
Q  349 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 399  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||||||||||    
T  13056660 atattcattcattgatgtggcaacacatcattgaatgcatgtgtaaaataa 13056710  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 1465795 - 1465743
Alignment:
Q  347 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 399  Q
    ||||||| |||||||||| ||  ||||||||||||  ||||||||||||||||    
T  1465795 tcatatttattaattgacgtgacaacacatcattggatgcatgtgtaaaataa 1465743  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 17358580 - 17358519
Alignment:
Q  345 tatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 406  Q
    |||||| |||||||||||||||| | ||||||||| |  |||||||||||||||| ||||||    
T  17358580 tatcatcttcattaattgacatgaagacacatcatagtatgcatgtgtaaaataactttaca 17358519  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 430
Target Start/End: Complemental strand, 11649122 - 11649039
Alignment:
Q  347 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtttacgaaaattaaact 430  Q
    ||||||||||||||||| |||  ||||||||||||  ||||||| |||||||| ||||||  ||| || ||  |||||||||||    
T  11649122 tcatattcattaattgagatgtcaacacatcattgtatgcatgtataaaataactttacatagttggtgtataaaaattaaact 11649039  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 45429318 - 45429370
Alignment:
Q  347 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 399  Q
    |||||||||||||||||||||| |||| ||||||   ||||||||||||||||    
T  45429318 tcatattcattaattgacatggcaacaaatcatttgatgcatgtgtaaaataa 45429370  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 400
Target Start/End: Complemental strand, 7465317 - 7465266
Alignment:
Q  349 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 400  Q
    ||||||||||||||||||  |||||||| ||||| | |||||||||||||||    
T  7465317 atattcattaattgacataaaaacacataattgaatccatgtgtaaaataat 7465266  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 18358845 - 18358792
Alignment:
Q  347 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 400  Q
    |||||||||||||||||||||  |||||||||||   |||||||| ||||||||    
T  18358845 tcatattcattaattgacatgacaacacatcatttgatgcatgtgcaaaataat 18358792  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 25487649 - 25487699
Alignment:
Q  351 attcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 401  Q
    |||||||||||||| ||| ||||||||||||| |  |||||||||||||||    
T  25487649 attcattaattgacgtggcaacacatcattgaatatatgtgtaaaataatt 25487699  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 3245879 - 3245827
Alignment:
Q  273 gtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaat 325  Q
    ||||||| ||||||||| |||  || ||||||||||||||||||||| |||||    
T  3245879 gtgtaaacttattttactcatatattcaatgacgtattgtcatatcaattaat 3245827  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 8514211 - 8514159
Alignment:
Q  274 tgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaata 326  Q
    |||| ||||||||||||||| ||| |||||| ||||||||| |||| ||||||    
T  8514211 tgtataattattttacacatacatgcaatgatgtattgtcacatcaattaata 8514159  T

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