View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1478_low_20 (Length: 204)
Name: NF1478_low_20
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1478_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 15878613 - 15878773
Alignment:
| Q |
30 |
tgatccacacatcgtatatgattctactttaaattgtatctgtcaaataactttgttaggagtactccttatcacattaaattatactttgatttgtcac |
129 |
Q |
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| T |
15878613 |
tgatccacacatcgtatatgattctactttaaattgtatctgtcaaataactttgttaggggtactccttatcacattaaattatactttgatttgtcac |
15878712 |
T |
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| Q |
130 |
attaaattatgttggtcacctttaacttaacatgcattaagaatccaatgcctcttagttc |
190 |
Q |
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| T |
15878713 |
attaaattatgttggtcacctttaacttaacatgcattaagaatccaatgcctcttagttc |
15878773 |
T |
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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 15908148 - 15908065
Alignment:
| Q |
30 |
tgatccacacatcgtatatga-ttctactttaaattgtatctgtcaaataactttgttaggagtactccttatcacattaaatt |
112 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||||| |
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| T |
15908148 |
tgatccacacattgtatatgaattctactttaaattgtatctatcaaataactttgttaagggtacaccttatcacattaaatt |
15908065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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