View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1478_low_9 (Length: 325)
Name: NF1478_low_9
Description: NF1478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1478_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 32940736 - 32941033
Alignment:
| Q |
18 |
gagtctccgcggaattttaatttttctatgatctccttggtaatcattcaaagataatttcctttaaatatagctatttgtgcgggggaagggggcacca |
117 |
Q |
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| T |
32940736 |
gagtctccgcggaattttaatttttctatgatctccttggtaatcatacaaagacaatttcctttaaatatagctatttgtgcgggggaagggggcacca |
32940835 |
T |
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| Q |
118 |
agacttaatggaagaggagttggaagggctgcattctttgttagctaatatgctttctttgactcgtttaaattctagtaactaatgacaatgatcaaga |
217 |
Q |
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| T |
32940836 |
agacttaatggaagaggagttggaagggctgcattctttgttagctaatatgctttctttgactcgtttaaattctagtaactaatgacaatgatcaaga |
32940935 |
T |
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| Q |
218 |
ttaaattggctaagagagggagatgataattctaagtacttccatggttaatgtattctaggcagcaatcaaacacaatcattttgattcatctcagt |
315 |
Q |
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| T |
32940936 |
ttaaatcggctaagagagggagatgataattctaagtacttccatggttaatgtcttctaggcagcgatcaaacacaatcattttgattcatgtcagt |
32941033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 18329804 - 18329886
Alignment:
| Q |
18 |
gagtctccgcggaattttaatttttctatgatctccttggtaatcattcaaagataatttcctttaaatatagctatttgtgc |
100 |
Q |
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| T |
18329804 |
gagtctccggggaatttttattagtttatgatctccttggcaatcataaaaagacaattcccttttaatatagctatttgtgc |
18329886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 20424514 - 20424596
Alignment:
| Q |
18 |
gagtctccgcggaattttaatttttctatgatctccttggtaatcattcaaagataatttcctttaaatatagctatttgtgc |
100 |
Q |
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| T |
20424514 |
gagtctccggggaatttttattagtttatgatctccttggcaatcataaaaagacaattcccttttaatatagctatttgtgc |
20424596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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