View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14790_high_1 (Length: 343)

Name: NF14790_high_1
Description: NF14790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14790_high_1
NF14790_high_1
[»] chr1 (12 HSPs)
chr1 (7-343)||(8933572-8933908)
chr1 (27-343)||(29833099-29833406)
chr1 (11-343)||(2403858-2404174)
chr1 (189-343)||(10911350-10911512)
chr1 (189-343)||(13011696-13011858)
chr1 (189-343)||(10909106-10909269)
chr1 (27-343)||(734602-734909)
chr1 (191-343)||(29833872-29834023)
chr1 (191-343)||(2409980-2410133)
chr1 (94-267)||(18353722-18353888)
chr1 (27-84)||(419213-419270)
chr1 (27-84)||(2416672-2416729)
[»] chr7 (23 HSPs)
chr7 (7-343)||(42678594-42678929)
chr7 (7-343)||(3932548-3932876)
chr7 (7-343)||(3934787-3935115)
chr7 (7-343)||(8733518-8733845)
chr7 (189-343)||(8731199-8731361)
chr7 (27-343)||(8414513-8414821)
chr7 (27-343)||(36464236-36464554)
chr7 (32-267)||(19786621-19786839)
chr7 (32-267)||(19788927-19789145)
chr7 (214-343)||(18395337-18395474)
chr7 (64-343)||(3052094-3052364)
chr7 (29-106)||(16497060-16497137)
chr7 (29-106)||(16535242-16535319)
chr7 (29-106)||(16630343-16630420)
chr7 (134-264)||(19093958-19094092)
chr7 (189-265)||(28610350-28610426)
chr7 (273-343)||(16496976-16497046)
chr7 (273-343)||(16535158-16535228)
chr7 (273-343)||(16630434-16630504)
chr7 (272-343)||(19786871-19786943)
chr7 (272-343)||(19789177-19789249)
chr7 (274-343)||(21769092-21769161)
chr7 (315-343)||(42680811-42680839)
[»] chr5 (11 HSPs)
chr5 (7-340)||(1779243-1779576)
chr5 (27-343)||(11849940-11850238)
chr5 (27-220)||(1779597-1779790)
chr5 (27-343)||(23164277-23164571)
chr5 (27-343)||(11852198-11852496)
chr5 (27-343)||(22600765-22601064)
chr5 (27-311)||(37207725-37207992)
chr5 (126-343)||(37215407-37215615)
chr5 (176-343)||(21743607-21743774)
chr5 (96-256)||(15468998-15469158)
chr5 (225-265)||(1779181-1779221)
[»] chr6 (2 HSPs)
chr6 (31-256)||(21199146-21199373)
chr6 (224-343)||(20642220-20642338)
[»] chr2 (10 HSPs)
chr2 (27-340)||(23859834-23860161)
chr2 (27-343)||(34576627-34576944)
chr2 (189-343)||(42277805-42277967)
chr2 (27-343)||(31486736-31487046)
chr2 (125-343)||(8995093-8995288)
chr2 (189-343)||(42275579-42275741)
chr2 (19-343)||(31489012-31489330)
chr2 (7-265)||(29801808-29802054)
chr2 (272-343)||(5164174-5164245)
chr2 (279-343)||(15730012-15730076)
[»] chr4 (11 HSPs)
chr4 (31-343)||(50855794-50856088)
chr4 (7-339)||(45166904-45167229)
chr4 (63-253)||(43179514-43179710)
chr4 (7-343)||(45162012-45162341)
chr4 (31-343)||(42468462-42468766)
chr4 (31-343)||(42470791-42471095)
chr4 (189-343)||(13776447-13776610)
chr4 (189-343)||(13774149-13774313)
chr4 (31-265)||(8739249-8739467)
chr4 (126-343)||(19429099-19429317)
chr4 (96-266)||(24908156-24908325)
[»] chr8 (6 HSPs)
chr8 (27-343)||(36379488-36379798)
chr8 (31-343)||(4876849-4877153)
chr8 (31-343)||(4879177-4879481)
chr8 (27-343)||(36377203-36377513)
chr8 (31-343)||(24519176-24519481)
chr8 (27-343)||(21268143-21268460)
[»] chr3 (5 HSPs)
chr3 (30-265)||(18966221-18966452)
chr3 (189-343)||(4530833-4530997)
chr3 (197-343)||(4533138-4533294)
chr3 (69-267)||(1701061-1701264)
chr3 (73-265)||(8535464-8535661)
[»] scaffold0050 (2 HSPs)
scaffold0050 (93-343)||(29251-29491)
scaffold0050 (93-343)||(31564-31806)
[»] scaffold0599 (1 HSPs)
scaffold0599 (191-343)||(1616-1778)
[»] scaffold1361 (1 HSPs)
scaffold1361 (236-343)||(1-117)
[»] scaffold0008 (1 HSPs)
scaffold0008 (273-343)||(88438-88508)
[»] scaffold0312 (1 HSPs)
scaffold0312 (27-84)||(11301-11358)
[»] scaffold0098 (1 HSPs)
scaffold0098 (288-343)||(3730-3785)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 8933908 - 8933572
Alignment:
Q  7 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8933908 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctattagacactctactaaataaaataaag 8933809  T
Q  107 cattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 206  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8933808 cactaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 8933709  T
Q  207 tagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttt 306  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8933708 tagtttgtaatgtagaaccttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaagtaatataacttt 8933609  T
Q  307 tctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||| |||||||||||||||||||||||||||||||    
T  8933608 tctttgaaaatattagagtgtttctctattttctcta 8933572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 29833406 - 29833099
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||      ||| |||| || ||||||  |    
T  29833406 actaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaactt 29833315  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||| | |||| |||||||||||||||| ||||| | |||||||||         ||||||||| ||||||||||||||| |||  ||    
T  29833314 ttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagcct 29833224  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttgcaaga--------atcaagcattgaatcattcaaataatataacttttctttaaaaata 318  Q
    ||||||||||||||||||||||||||||||  |||||||||  | |        ||||||||||||||||||||| ||||||||||||||||| | ||||    
T  29833223 tcctagagtagtataaataaggctcaccacctagtgttttggcacattcaaatcatcaagcattgaatcattcaagtaatataacttttctttgagaata 29833124  T
Q  319 ttagagtgtttctctattttctcta 343  Q
    |||||||||||||||||||||||||    
T  29833123 ttagagtgtttctctattttctcta 29833099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 2404174 - 2403858
Alignment:
Q  11 tggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcatt 110  Q
    ||||||| |||| || ||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||| |||  |||||||||      ||| |    
T  2404174 tggaaatctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagatact--actaaataa------gcact 2404083  T
Q  111 aggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagt 210  Q
    ||| || ||||||  ||||||||||||||||| | |||| |||||||||||||| | ||||| | |||||||||         ||||||||| |||||||    
T  2404082 agggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagt 2403992  T
Q  211 ttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataa-cttttct 309  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||  |  ||||||||| ||| ||||||||||||||||  ||||||    
T  2403991 ttgtaatggagagtcttcctagagtagtataaataaggttcaccacttagtgttttggcatcatcaagcatagaaacattcaaataatataatattttct 2403892  T
Q  310 ttaaaaatattagagtgtttctctattttctcta 343  Q
    || | |||||||||| ||||||||||||||||||    
T  2403891 ttgagaatattagagagtttctctattttctcta 2403858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 10911350 - 10911512
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgtt--------ttgcaagaatcaagca 280  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||        ||  ||||||||||||    
T  10911350 aatgtttctagatatttctagtttgtaatgtagacccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaaagaatcaagca 10911449  T
Q  281 ttgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  10911450 ttgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttatcta 10911512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 13011696 - 13011858
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgc--------aagaatcaagca 280  Q
    |||||||||||||| || |||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||| |         ||||||||||||    
T  13011696 aatgtttctagatatttttagtttttaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttagacacattcaaagaatcaagca 13011795  T
Q  281 ttgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  13011796 ttgaatcattcaaataatataacttttctttgagaatattagagtgtttctctattttctcta 13011858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 10909106 - 10909269
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgtt--------ttgcaagaatcaagca 280  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||        ||  ||||||||||||    
T  10909106 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaaagaatcaagca 10909205  T
Q  281 ttgaatcattcaaataatataacttttc-tttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  10909206 ttgaatcattcaagtaatataacttttcgtttgagaatattagagtgtttctctattttctcta 10909269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 734909 - 734602
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| |||||||||| ||||||| ||||||| |||||||||||||||||||  |||||||||      ||| |||| || ||||||  |    
T  734909 actaaagaataatatagaagtctctagaatactagggaataacaaggaagctactagacact--actaaataa------gcactagggaagtcttaactt 734818  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    ||||||||||||||||   |||| |||||||||||||| | ||||| | |||||||||         ||||||||| ||||||||||||||| |||  ||    
T  734817 ttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagcct 734727  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttg--------caag--aatcaagcattgaatcattcaaataatataacttttctttaaaaa 316  Q
    ||||||| ||||||||||||||||||||||  |||||||||        ||||  ||||||||||||||| |||||| |||||||||||||| || | ||    
T  734726 tcctagaatagtataaataaggctcaccacctagtgttttggtcatactcaagataatcaagcattgaatgattcaagtaatataacttttccttgagaa 734627  T
Q  317 tattagagtgtttctctattttctcta 343  Q
    ||||  |||||||||||||||||||||    
T  734626 tatt--agtgtttctctattttctcta 734602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 191 - 343
Target Start/End: Original strand, 29833872 - 29834023
Alignment:
Q  191 tgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcatt 290  Q
    |||||||||||| |||||||| |||||| |||  ||||||||||||||||||||||||||||| ||  ||||||||| | || |||||||||||||| ||    
T  29833872 tgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcactacctagtgttttggatga-tcaagcattgaatcctt 29833970  T
Q  291 caaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||| ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  29833971 caagtaatataacttttctttgagaatattagagtgtttctctattttctcta 29834023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 343
Target Start/End: Complemental strand, 2410133 - 2409980
Alignment:
Q  191 tgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcatt 290  Q
    |||||||||||| | ||| ||||||||| |||  ||||||||||||||||||||||||||||||||  |||||||||  |  ||||||||| ||| ||||    
T  2410133 tgtttctagatattgctaatttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatcatcaagcatagaaacatt 2410034  T
Q  291 caaataatataa-cttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||  |||||||| | ||||||| || ||||||||||||||||||    
T  2410033 caaataatataatattttctttgagaatattatagagtttctctattttctcta 2409980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 267
Target Start/End: Original strand, 18353722 - 18353888
Alignment:
Q  94 aaataaaataaagcattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgt 193  Q
    |||||||||  |||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||       | ||| ||| ||||||||||    
T  18353722 aaataaaattgagcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtatccatgt-------cttttatttctaatcaatgt 18353814  T
Q  194 ttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttg 267  Q
    ||||||||  ||||| |||||||||| ||   || |||||||||||||| || |||||||| | ||||||||||    
T  18353815 ttctagatctttctattttgtaatgtggagcattactagagtagtataattagggctcacctccaagtgttttg 18353888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 419270 - 419213
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactaga 84  Q
    ||||||||| |||||||||||||||| |||  ||  ||||||||||||||||||||||    
T  419270 actaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 419213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 2416729 - 2416672
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactaga 84  Q
    |||| |||| ||||| ||| |||||| ||||||| |||||||||||||||||||||||    
T  2416729 actacagaataatatagaactctctagaatactagggaataataaggaagctactaga 2416672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 42678929 - 42678594
Alignment:
Q  7 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42678929 aatatggaagtttctagaaaactaaagaataatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 42678830  T
Q  107 cattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 206  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42678829 cactaggaaaatcttaatgtttctagatccttctagtcatatgacctagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 42678730  T
Q  207 tagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttt 306  Q
    ||||||||||||||||| ||||| |  ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  42678729 tagtttgtaatgtagaaccttcccaaggtagtataaataaggctcaccaccaagtgttttg-aaggatcaagcattgaatcattcaagtaatataacttt 42678631  T
Q  307 tctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||| | ||||||||||||||||| |||||||||||    
T  42678630 tctttgagaatattagagtgtttctttattttctcta 42678594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 3932548 - 3932876
Alignment:
Q  7 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||||| | |||| || ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||| |||  |||||||||      |    
T  3932548 aatatggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaagctactagatact--actaaataa------g 3932639  T
Q  107 cattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 206  Q
    || |||| || ||||||  ||||||||||||||||| | |||| |||||||||||||| | ||||| | |||||||||         ||||||||| |||    
T  3932640 cactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttc 3932730  T
Q  207 tagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttg------caag---aatcaagcattgaatcattcaaataa 297  Q
    |||||||||||| |||  ||||||||| |||||||||||||||||||||   |||||||||      ||||   |||||||||||||||||||||| |||    
T  3932731 tagtttgtaatggagagccttcctagaatagtataaataaggctcaccatctagtgttttggatactcaagcataatcaagcattgaatcattcaagtaa 3932830  T
Q  298 tataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  3932831 tataacttttctttgagaatattagagtgtttctctattttctcta 3932876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 3934787 - 3935115
Alignment:
Q  7 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||||| | |||| || ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||| |||  |||||||||      |    
T  3934787 aatatggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaagctactagatact--actaaataa------g 3934878  T
Q  107 cattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 206  Q
    || |||| || ||||||  ||||||||||||||||| | |||| |||||||||||||| | ||||| | |||||||||         ||||||||| |||    
T  3934879 cactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttc 3934969  T
Q  207 tagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttg------caag---aatcaagcattgaatcattcaaataa 297  Q
    |||||||||||| |||  ||||||||| |||||||||||||||||||||   |||||||||      ||||   |||||||||||||||||||||| |||    
T  3934970 tagtttgtaatggagagccttcctagaatagtataaataaggctcaccatctagtgttttggatactcaagcataatcaagcattgaatcattcaagtaa 3935069  T
Q  298 tataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  3935070 tataacttttctttgagaatattagagtgtttctctattttctcta 3935115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 8733845 - 8733518
Alignment:
Q  7 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||||| | |||| || ||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||  |||||||||      |||    
T  8733845 aatatggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagaca--ctactaaat------aag 8733754  T
Q  107 cattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 206  Q
    || ||||    ||||||  ||||||||||||||||| | |||| |||||||||||||| | ||||| | ||||||         |||||||||||| |||    
T  8733753 cactagg---gtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt---------tgtttctagatatttc 8733666  T
Q  207 tagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttg-------caaga---atcaagcattgaatcattcaaata 296  Q
    |||||||||| | |||  ||||||||||||||||||||||||||||||||  |||||||||       |||||   ||||||||||||| ||||||||||    
T  8733665 tagtttgtaaaggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagaatcatcaagcattgaagcattcaaata 8733566  T
Q  297 atataa-cttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||| ||||||||| | |||||||||| ||||||||||||||||||    
T  8733565 atataatcttttctttgagaatattagagagtttctctattttctcta 8733518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 189 - 343
Target Start/End: Complemental strand, 8731361 - 8731199
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgtt--------ttgcaagaatcaagca 280  Q
    |||||||||||||| ||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||        ||  ||||||||||||    
T  8731361 aatgtttctagatatttctaatttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacatttaaagaatcaagca 8731262  T
Q  281 ttgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  8731261 ttgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttatcta 8731199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 8414821 - 8414513
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| |||||||||| ||||||| |||||||||||||| ||||||||||||  |||||||||      ||| |||| || |||| |  |    
T  8414821 actaaagaataatatagaagtctctagaatactagggaataataaggaaactactagacact--actaaataa------gcactagggaagtcttgactt 8414730  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    ||||||||| |||||||  |||  |||| | ||||||| | ||||| | |||||||||         ||||||||  ||||||||||||||| |||  ||    
T  8414729 ttctagatc-ttctagttttatatactaaaatatccatatctctagacttttctttgt---------ttctagatttttctagtttgtaatggagagcct 8414640  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttg-------caagaat---caagcattgaatcattcaaataatataacttttctttaaaaa 316  Q
    ||||||||||||||||||||||||||||||  |||||||||       |||| ||   ||||||||||||||||||||||||||||||||||||| | ||    
T  8414639 tcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagcatattcaagcattgaatcattcaaataatataacttttctttgagaa 8414540  T
Q  317 tattagagtgtttctctattttctcta 343  Q
    ||||||||||||| |||||||||||||    
T  8414539 tattagagtgtttttctattttctcta 8414513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 36464554 - 36464236
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    |||||| || ||||| |||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||      ||| |||| || |||| |  |    
T  36464554 actaaataataatatagaagtctctagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttgactt 36464463  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||||  |||| |||||||||||||| | || || | |||||||||         ||||||||| ||||||||| ||||| |||  ||    
T  36464462 ttctagatccttctagttttatgtactagagtatccatatctccagacttttctttgt---------ttctagatatttctagtttataatggagagcct 36464372  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttg----------------caagaat---caagcattgaatcattcaaataatataactttt 307  Q
    ||||||||||||||||||||||||||||||  |||||||||                |||| ||   ||||||||||||||||||| |||||||||||||    
T  36464371 tcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattgaatcattcaagtaatataactttt 36464272  T
Q  308 ctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||| | |||||||||||||||||| ||||||||||    
T  36464271 ctttgagaatattagagtgtttctcaattttctcta 36464236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 267
Target Start/End: Original strand, 19786621 - 19786839
Alignment:
Q  32 agaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttcta 131  Q
    |||| ||| |||||||||||| |||| || |||||||||||||||||||||||||||  |||||||||      ||| |||| || ||||||  ||||||    
T  19786621 agaataatgtggaagtctctagaatattagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaacttttcta 19786712  T
Q  132 gatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttccta 231  Q
    ||||||||||| | |||| |||||||||||||| | ||||| | |||||||||         ||||||||| ||||||||||||||| |||  |||||||    
T  19786713 gatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagccttccta 19786803  T
Q  232 gagtagtataaataaggctcaccactaagtgttttg 267  Q
    |||||||||||||||||||||||||  |||||||||    
T  19786804 gagtagtataaataaggctcaccacctagtgttttg 19786839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 267
Target Start/End: Original strand, 19788927 - 19789145
Alignment:
Q  32 agaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttcta 131  Q
    |||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||      ||| |||| || ||||||  ||||||    
T  19788927 agaataatgtggaagtctctagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaacttttcta 19789018  T
Q  132 gatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttccta 231  Q
    ||||||||||| | |||| |||||||||||||| | ||||| | |||||||||         ||||||||| ||||||||||||||| |||  ||| |||    
T  19789019 gatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagccttacta 19789109  T
Q  232 gagtagtataaataaggctcaccactaagtgttttg 267  Q
    |||||||||||||||||||||||||  |||||||||    
T  19789110 gagtagtataaataaggctcaccacctagtgttttg 19789145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 214 - 343
Target Start/End: Original strand, 18395337 - 18395474
Alignment:
Q  214 taatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgc--------aagaatcaagcattgaatcattcaaataatataactt 305  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||| |         |||| |||||||||||||||||||| |||||||||||    
T  18395337 taatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttagacacattaaaagagtcaagcattgaatcattcaagtaatataactt 18395436  T
Q  306 ttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||| | |||||||||||||||||||||||||||||    
T  18395437 ttctttgagaatattagagtgtttctctattttctcta 18395474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 64 - 343
Target Start/End: Original strand, 3052094 - 3052364
Alignment:
Q  64 aataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatcca 163  Q
    |||||||||||||||||||||||||  |||||||||      |||||||| || ||||||  ||||||||||||||||||  |||| |||||| ||||||    
T  3052094 aataataaggaagctactagacact--actaaataa------gcattagggaagtcttaacttttctagatccttctagttttatgtactagaatatcca 3052185  T
Q  164 tgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgt 263  Q
    | | ||||| | |||||||||         ||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||||||||  |||||    
T  3052186 tatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgt 3052276  T
Q  264 tttg-------caag---aatcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||       ||||   | |||||||||||| ||||||||||||||||  ||||||| | |||| ||||  |||||| |||||||||||    
T  3052277 tttgatatactcaagtatactcaagcattgaagcattcaaataatataaactttctttgagaataataga--gtttctttattttctcta 3052364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 16497137 - 16497060
Alignment:
Q  29 taaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16497137 taaagaataatgtggaagtttctagaatactatggaataataaggaagctactagacactctactaaataaaataaag 16497060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 16535319 - 16535242
Alignment:
Q  29 taaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16535319 taaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacactctactaaataaaataaag 16535242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 16630343 - 16630420
Alignment:
Q  29 taaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16630343 taaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacactctactaaataaaataaag 16630420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 19094092 - 19093958
Alignment:
Q  134 tccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtaga----atcttcc 229  Q
    ||||||||| | ||| ||||||||||||||||| ||||| | ||||||||||||| || ||| |||||| |||||||||||||||||||     |||| |    
T  19094092 tccttctagacttataaactagagtatccatgtctctagacttttctttgtaatcgatatttttagatatttctagtttgtaatgtagagtacgtctttc 19093993  T
Q  230 tagagtagtataaataaggctcaccactaagtgtt 264  Q
    ||||||||||||||||||| || |||| |||||||    
T  19093992 tagagtagtataaataaggttcgccaccaagtgtt 19093958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 28610426 - 28610350
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttt 265  Q
    |||||||||||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||    
T  28610426 aatgtttctagatatttctagtttgtaatgtagagcctttctagagtagtataaataaggctcaccaccaagtgttt 28610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 16497046 - 16496976
Alignment:
Q  273 atcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  16497046 atcaagcattgaatcatttaagtaatataacttttctttgagaatattagagtgtttctctattttctcta 16496976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 16535228 - 16535158
Alignment:
Q  273 atcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  16535228 atcaagcattgaatcatttaagtaatataacttttctttgagaatattagagtgtttctctattttctcta 16535158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 16630434 - 16630504
Alignment:
Q  273 atcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  16630434 atcaagcattgaatcatttaagtaatataacttttctttgagaatattagagtgtttctctattttctcta 16630504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 19786871 - 19786943
Alignment:
Q  272 aatcaagcattgaatcattcaaataatataactttt-ctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||||| |||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  19786871 aatcaagcattgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctcta 19786943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 19789177 - 19789249
Alignment:
Q  272 aatcaagcattgaatcattcaaataatataactttt-ctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||||| |||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  19789177 aatcaagcattgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctcta 19789249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 21769161 - 21769092
Alignment:
Q  274 tcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||||||| |||||||||||||  |  ||||||| | ||||||| || ||||||||||||||||||    
T  21769161 tcaagcattgaaacattcaaataataacaactttctttgagaatattaaagagtttctctattttctcta 21769092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 343
Target Start/End: Original strand, 42680811 - 42680839
Alignment:
Q  315 aatattagagtgtttctctattttctcta 343  Q
    |||||||||||||||||||||||||||||    
T  42680811 aatattagagtgtttctctattttctcta 42680839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 340
Target Start/End: Complemental strand, 1779576 - 1779243
Alignment:
Q  7 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1779576 aatatggaagtttctagaaaactaaagaataatatagaagtctctaaaatactatggaataataaggaagctactagacactccactaaataaaataaag 1779477  T
Q  107 cattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 206  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1779476 cactagaaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 1779377  T
Q  207 tagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttt 306  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||||||  |||||||||| || ||||||| |||||||||||||| ||||||||||||    
T  1779376 tagtttgtaatgtagagccttcctagagtggtataaataaggctcaccaacaagtgttttgtaaaaatcaagtattgaatcattcaagtaatataacttt 1779277  T
Q  307 tctttaaaaatattagagtgtttctctattttct 340  Q
    ||||| | |||||||||||||| |||||||||||    
T  1779276 tctttgagaatattagagtgttcctctattttct 1779243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 11850238 - 11849940
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||||  |||||||||      ||| |||| || ||||||  |    
T  11850238 actaaagaataatatagaagtctctaaaatactagggaataataagaaagctactagacact--actaaataa------gcactagggaagtcttaaatt 11850147  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||| | |||| || ||||||||||| | ||||| | |||||||||         ||||||||| |||||||| |||||| |||  ||    
T  11850146 ttctagatccttctaggcttatgtacaagagtatccatatctctagacttttctttgt---------ttctagatatttctagttggtaatggagagcct 11850056  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtg 326  Q
    ||||||||||||||||||||||||||||||  ||||||||| |  | |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  11850055 tcctagagtagtataaataaggctcaccacctagtgttttggatca-tcaagcattgaatcattcaaataatataacttttctttgagaatattagagtg 11849957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 1779790 - 1779597
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| |||||||||||||||| |||||||  |||||||   |||||||||||||| ||||||  ||||||||||||  |||| ||||||||||||    
T  1779790 actaaagaataatatggaagtctctagaatactaaagaataatgtcgaagctactagacattctactggataaaataaagcgctagggaaatcttaatgt 1779691  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgta 220  Q
    |||||||||||||||||||||||||||||| ||||| | | |||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  1779690 ttctagatccttctagtcatatgaactagaatatccctatctctaggcctttccttgtaatcaatgtttctagatatttctagtttgtaatgta 1779597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 23164571 - 23164277
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||      || |||| || ||||||  |    
T  23164571 actaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacact--actaaataaa------cactagggaagtcttaactt 23164480  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||| | |||| |||||||||||||| | ||||| | |||||||||         ||||||||| |||||||| |||||| |||  ||    
T  23164479 ttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagttggtaatggagagcct 23164389  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtg 326  Q
    ||||||||||||||||||||||| ||||||  ||||||||| |      |||||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  23164388 tcctagagtagtataaataaggcccaccacctagtgttttggat-----aagcattgaatcattcaagtaatataacttttctttgagaatattagagtg 23164294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 11852496 - 11852198
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||      ||| |||| || || |||  |    
T  11852496 actaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcataactt 11852405  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    ||||||  |||||||| | |||| |||||||||||||| | ||||| | ||| |||||         ||||||||| |||||||| |||||| |||  ||    
T  11852404 ttctaggaccttctaggcttatgtactagagtatccatatctctagacttttatttgt---------ttctagatatttctagttggtaatggagagcct 11852314  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtg 326  Q
    ||||||||||||||||||||||||||||||  ||||||||| |    |||||||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  11852313 tcctagagtagtataaataaggctcaccacctagtgttttggatcg-tcaagcattgaatcattcaagtaatataacttttctttgagaatattagagtg 11852215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 27 - 343
Target Start/End: Original strand, 22600765 - 22601064
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    |||||| || ||||| |||||||||| ||||||||||||||||||| |||||||| ||||||  |||||||||      ||| |||| || ||||||  |    
T  22600765 actaaataataatatagaagtctctagaatactatggaataataagaaagctacttgacact--actaaataa------gcactagggaagtcttaactt 22600856  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||| | |||| |||||||||||||| | ||||| | |||||||||         ||||||||| |||||||| |||||| ||| |||    
T  22600857 ttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagttggtaatggagagtct 22600947  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataa-cttttctttaaaaatattagagt 325  Q
    | ||| ||||||||||||||||||||||||  |||||||||  |  ||||||||||||| |||||||||||||||| ||||||||| | ||||||||||     
T  22600948 tgctaaagtagtataaataaggctcaccacctagtgttttg-gatcatcaagcattgaagcattcaaataatataatcttttctttgagaatattagaga 22601046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 27 - 311
Target Start/End: Original strand, 37207725 - 37207992
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| ||||||| || ||||||| |||||||||||||||||||||||||||  |||||||||      ||| |||| || ||||||  |    
T  37207725 actaaagaataatatagaagtctgtagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaactt 37207816  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||| | |||| |||||||||||||||| ||||| | |||||||||         ||||||||| |||||||| |||||| |||  ||    
T  37207817 ttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaatggagagcct 37207907  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataa-cttttcttt 311  Q
    ||||||||||||||||||||||||||||||  |||||||||| |  ||||||||||||| |||||||||||||||| |||||||||    
T  37207908 tcctagagtagtataaataaggctcaccacctagtgttttgc-atcatcaagcattgaagcattcaaataatataatcttttcttt 37207992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 126 - 343
Target Start/End: Original strand, 37215407 - 37215615
Alignment:
Q  126 tttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatc 225  Q
    ||||||||||||||||| | |||  |||||||||||||||| ||||  | |||||||||         ||||||||| |||||||| |||||| |||  |    
T  37215407 tttctagatccttctaggcttatatactagagtatccatgtctctaaacttttctttgt---------ttctagatatttctagttggtaatgaagagcc 37215497  T
Q  226 ttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataa-cttttctttaaaaatattagag 324  Q
    |||||||||||||||||||||||||||||||  |||||||||| |  ||||||||||||| |||||||||||||||| ||||||||| | ||||||||||    
T  37215498 ttcctagagtagtataaataaggctcaccacatagtgttttgc-atcatcaagcattgaagcattcaaataatataatcttttctttgagaatattagag 37215596  T
Q  325 tgtttctctattttctcta 343  Q
     ||||||||||||||||||    
T  37215597 agtttctctattttctcta 37215615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 21743607 - 21743774
Alignment:
Q  176 tttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatc 275  Q
    ||||||||||||| |||||| |||||| || ||||||||| ||||||  |||||||||||||||||||||||  ||||||| ||||| || |  | | ||    
T  21743607 tttctttgtaatccatgtttttagatatttttagtttgtagtgtagagccttcctagagtagtataaataagattcaccaccaagtggttaggcatactc 21743706  T
Q  276 aagcattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||  |||||||||||||||  ||||||| | |||||||||| ||||||||||||||||||    
T  21743707 aagcattgaagaattcaaataatataaactttctttgagaatattagagagtttctctattttctcta 21743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 256
Target Start/End: Original strand, 15468998 - 15469158
Alignment:
Q  96 ataaaataaagcattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgttt 195  Q
    ||||||||||||| ||||||||| ||||  ||||||||||| |||||||||||||| ||| ||||| || | ||||  | |||| |||||||||| | ||    
T  15468998 ataaaataaagcactaggaaaatattaacttttctagatccatctagtcatatgaattagtgtatctatatctctaaacttttccttgtaatcaaagctt 15469097  T
Q  196 ctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccac 256  Q
    | |||| |||||| |||||||  | || |||| ||| ||||||||||||| ||||||||||    
T  15469098 caagatcattctattttgtaacatggagtcttactatagtagtataaatatggctcaccac 15469158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 1779221 - 1779181
Alignment:
Q  225 cttcctagagtagtataaataaggctcaccactaagtgttt 265  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  1779221 cttcctagagtagtataaataaggctcaccaccaagtgttt 1779181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 21199146 - 21199373
Alignment:
Q  31 aagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttct 130  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  ||||||||||||||||    
T  21199146 aagaataatatggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaagcactagttaaatcttaatgtttct 21199245  T
Q  131 agatccttctagtcatatgaactagagtatcc--atgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttc 228  Q
    ||||||||||||||||||||||| ||||||||  |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |  ||||    
T  21199246 agatccttctagtcatatgaactggagtatccatatgtctctaggcctttcattgtaatcaatgtttctagatatttctagtttgtaatgtacagccttc 21199345  T
Q  229 ctagagtagtataaataaggctcaccac 256  Q
    || ||||| ||||||||||| |||||||    
T  21199346 ctggagtactataaataaggttcaccac 21199373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 343
Target Start/End: Original strand, 20642220 - 20642338
Alignment:
Q  224 tcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttttctttaaaaatattaga 323  Q
    |||||||| |||||||||||||||||||| ||  |||||| | | |  | |||||||||||| ||||||||||| |  |  ||||||| | |||||||||    
T  20642220 tcttcctacagtagtataaataaggctcatcatcaagtgtgtaggat-agtcaagcattgaagcattcaaataaaaatatatttctttgagaatattaga 20642318  T
Q  324 gtgtttctctattttctcta 343  Q
    |  |||||||||||||||||    
T  20642319 gaatttctctattttctcta 20642338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 7e-80; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 27 - 340
Target Start/End: Original strand, 23859834 - 23860161
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag-----cattaggaaaatctt 121  Q
    ||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||      || |||  |||||||    
T  23859834 actaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatctt 23859933  T
Q  122 aatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtag 221  Q
    |   ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23859934 agcttttctagatccttctagtcttatgaactagagtatgcatgtttctaggcctttctttgtaatcaatatttctagataattctagtttgtaatgtag 23860033  T
Q  222 aatcttcctagagtagtataaataaggctcaccactaagtgttt-------tgcaag--aatcaagcattgaatcattcaaataatataacttttcttta 312  Q
    |  |||||||||||||||||||||||||||||||| ||||||||       | ||||  | |||||||||||| |||| ||||||||  |  |||||||     
T  23860034 agccttcctagagtagtataaataaggctcaccaccaagtgtttacgtatattcaagatactcaagcattgaaacatttaaataataatatctttctttg 23860133  T
Q  313 aaaatattagagtgtttctctattttct 340  Q
    | |||||||||| |||||||||||||||    
T  23860134 agaatattagagagtttctctattttct 23860161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 34576944 - 34576627
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaa-----gcattaggaaaatctt 121  Q
    ||||||||| ||||||||||||||||||||||||  ||||||  ||||||||||| |||||||||||||||||||||||     ||| |||  |||||||    
T  34576944 actaaagaataatatggaagtctctaaaatactaaagaataacgaggaagctactggacactctactaaataaaataaaattacgcactagagaaatctt 34576845  T
Q  122 aatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtag 221  Q
    ||  ||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  34576844 aacttttctagatccttctagtcatatgaactagagtattcatgtctctagacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtag 34576745  T
Q  222 aatcttcct-agagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttttctttaaaaatatt 320  Q
    |  |||||| ||| |||||||||||||||||||||  |||||||| |    | | ||| ||| || ||||||||||||||    ||||||| | ||||||    
T  34576744 agccttcctaagattagtataaataaggctcaccatcaagtgtttag--gcattgaagaattcaagcattcaaataatat---ctttctttgagaatatt 34576650  T
Q  321 agagtgtttctctattttctcta 343  Q
    |||| ||||||||||||||||||    
T  34576649 agagagtttctctattttctcta 34576627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 189 - 343
Target Start/End: Complemental strand, 42277967 - 42277805
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgtt--------ttgcaagaatcaagca 280  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        ||  ||||||||||||    
T  42277967 aatgtttctagatatttctagtttgtaatgtagagtcttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaaagaatcaagca 42277868  T
Q  281 ttgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  42277867 ttgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctcta 42277805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 27 - 343
Target Start/End: Original strand, 31486736 - 31487046
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    |||| |||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||      ||| |||| || ||||||  |    
T  31486736 actagagaataatatagaagtctctagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaactt 31486827  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||| | |||| |||||||||||||| | ||| | | |||||||||         ||| ||||| ||||||||||||||| |||  ||    
T  31486828 ttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgt---------ttccagatatttctagtttgtaatggagagcct 31486918  T
Q  227 tcctagagtagtataaataaggctcacca-ctaagtgttttg-------caag--aatcaagcattgaatcattcaaataatataactttt-ctttaaaa 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||       ||||  ||||||||||||||| |||||| ||||||||||||| |||| | |    
T  31486919 tcctagagtagtataaataaggctcaccacctaagtgttttggcatactcaagataatcaagcattgaatgattcaagtaatataacttttcctttgaga 31487018  T
Q  316 atattagagtgtttctctattttctcta 343  Q
    ||||||||||||||||||||||||||||    
T  31487019 atattagagtgtttctctattttctcta 31487046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 125 - 343
Target Start/End: Complemental strand, 8995288 - 8995093
Alignment:
Q  125 gtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaat 224  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||                        
T  8995288 gtttctagatccttctagtcatatgaactagagtatccatgcttctaggcctttctttgtaatca-tgtttctagataat-------------------- 8995210  T
Q  225 cttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttttctttaaaaatattagag 324  Q
      ||||||||||||||||||||||||| |||| |||||||||| || | |||||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  8995209 --tcctagagtagtataaataaggctctccaccaagtgttttgtaatactcaagcattgaatcattcaagtaatataacttttctttgagaatattagag 8995112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 189 - 343
Target Start/End: Complemental strand, 42275741 - 42275579
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgtt--------ttgcaagaatcaagca 280  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||        ||  |||||||||| |    
T  42275741 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaaagaatcaagta 42275642  T
Q  281 ttgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  42275641 ttgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctcta 42275579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 31489012 - 31489330
Alignment:
Q  19 tctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaat 118  Q
    ||||||| ||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||  |||||||||      ||||| |||| || |    
T  31489012 tctaaaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagaca--ctactaaat------aagcactagggaagt 31489103  T
Q  119 cttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatg 218  Q
    ||||   ||||||||||||||||  | |||| |||||||||||||| | ||| | | ||||||         |||||| ||||| |||||||||||||||    
T  31489104 cttagcttttctagatccttctaagcttatgtactagagtatccatatctctggacttttctt---------tgtttccagatatttctagtttgtaatg 31489194  T
Q  219 tagaatcttcctagagtagtataaataaggctcacca-ctaagtgttttg-------caag--aatcaagcattgaatcattcaaataatataactttt- 307  Q
     |||  ||||||| ||||||||||||||||||||||| ||||||||||||       ||||  ||||||||||||||| |||||| |||||||||||||     
T  31489195 gagagccttcctaaagtagtataaataaggctcaccacctaagtgttttggcatactcaagataatcaagcattgaatgattcaagtaatataacttttc 31489294  T
Q  308 ctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||| | |||||||||||||||||||||||||||||    
T  31489295 ctttgagaatattagagtgtttctctattttctcta 31489330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 29801808 - 29802054
Alignment:
Q  7 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaa----gctactagacactctactaaataaaat 102  Q
    ||||||||| | |||| || || |||||| |||| |||||| |||| |||||||  |||||||||||||    ||||||||||||||||       ||||    
T  29801808 aatatggaagtctctagaacaccaaagaataatagggaagtatctagaatactaaagaataataaggaatctagctactagacactcta-------aaat 29801900  T
Q  103 aaagcattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagata 202  Q
     ||||| | | |||||||||||||||||| |||||||||||||||||||||| || |||||| | ||||| | |||||||||         || ||||||    
T  29801901 taagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgt---------ttgtagata 29801991  T
Q  203 attctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttt 265  Q
     |||||||||||||||  || ||||||||||||||||||||||||||||||||| ||||||||    
T  29801992 tttctagtttgtaatggggagtcttcctagagtagtataaataaggctcaccaccaagtgttt 29802054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 343
Target Start/End: Complemental strand, 5164245 - 5164174
Alignment:
Q  272 aatcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  5164245 aatcaagcattgaagcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctcta 5164174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 15730012 - 15730076
Alignment:
Q  279 cattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||||| ||||||||||||| ||| | |||||||||| ||||||||||||||||||    
T  15730012 cattgaatcattcaagtaatataacttttatttgagaatattagagagtttctctattttctcta 15730076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 343
Target Start/End: Complemental strand, 50856088 - 50855794
Alignment:
Q  31 aagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttct 130  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||      ||| |||| || ||||||  |||||    
T  50856088 aagaataatatggaagtctctagaatactatggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaacttttct 50855997  T
Q  131 agatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcct 230  Q
    |||||||||||| | |||| || ||||||||||| | ||||| | |||||||||         ||||||||| |||||||| |||||| |||  ||||||    
T  50855996 agatccttctaggcttatgtaccagagtatccatatctctagacttttctttgt---------ttctagatatttctagttggtaatggagagccttcct 50855906  T
Q  231 agagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtgtttc 330  Q
    |||||||||||||||||| |||||||  ||||||||| |  | |||||||||||||||||||| |||||||||||||| |  | ||||||||||||||||    
T  50855905 agagtagtataaataaggttcaccacctagtgttttggatca-tcaagcattgaatcattcaagtaatataacttttcctcgagaatattagagtgtttc 50855807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 45166904 - 45167229
Alignment:
Q  7 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||||| | |||| || ||||||||| ||||| ||||||| || ||||||| |||||||||||||||||||||||||||  |||||||||      |    
T  45166904 aatatggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataaggaagctactagacact--actaaataa------g 45166995  T
Q  107 cattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 206  Q
    || |||| || |||| |  |||||||||||||||||   |||| |||||||||||||| | ||||| | |||||||||         ||||||||| |||    
T  45166996 cactagggaagtctttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttc 45167086  T
Q  207 tagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttg-------caagaatca---agcattgaatcattcaaata 296  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||||  |||||||||       |||| ||||   | ||||||||||||||||||    
T  45167087 tagtttgtaatggagagtcttcctagaatagtataaataaggctcaccacctagtgttttggcatactcaagcatcatcaaacattgaatcattcaaata 45167186  T
Q  297 atataacttttctttaaaaatattagagtgtttctctattttc 339  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  45167187 atataacttttttttaagaatattagagtgtttctctattttc 45167229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 253
Target Start/End: Original strand, 43179514 - 43179710
Alignment:
Q  63 gaataataaggaagctactagacactctactaaataaaataaa------gcattaggaaaatcttaatgtttctagatccttctagtcatatgaactaga 156  Q
    |||||||||||||||||||||||||||||||||||||||||||      ||||||   |||||||||  ||| | |||||||||||||||||||||||||    
T  43179514 gaataataaggaagctactagacactctactaaataaaataaaaattaagcattaaagaaatcttaacttttttggatccttctagtcatatgaactaga 43179613  T
Q  157 gtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcac 253  Q
    |||||||||| ||||  | |||||||||||||||||||| |||||| ||||||||||||||| ||| | || |||||||||||||||| ||||||||    
T  43179614 gtatccatgtctctatacttttctttgtaatcaatgtttgtagatatttctagtttgtaatgcagagtttttctagagtagtataaattaggctcac 43179710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 45162012 - 45162341
Alignment:
Q  7 aatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaag 106  Q
    ||||||||| | |||| || ||||||||| ||||| ||||||| || ||||||| ||||||||||| |||||||||||||||  |||||||||      |    
T  45162012 aatatggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataagaaagctactagacact--actaaataa------g 45162103  T
Q  107 cattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattc 206  Q
    || |||| || |||| |  |||||||||||||||||   |||| |||||||||||||| | ||||| | |||||||||         ||||||||| |||    
T  45162104 cactagggaagtctttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttc 45162194  T
Q  207 tagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttg-------caagaatca---agcattgaatcattcaaata 296  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||||  |||||||||       |||| ||||   | ||||||||||||||| ||    
T  45162195 tagtttgtaatggagagtcttcctagaatagtataaataaggctcaccacctagtgttttggcatactcaagcatcatcaaacattgaatcattcaagta 45162294  T
Q  297 atataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||    
T  45162295 atataacttttctttgagaatattagagtgtttctctattttctcta 45162341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 31 - 343
Target Start/End: Complemental strand, 42468766 - 42468462
Alignment:
Q  31 aagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttct 130  Q
    ||||| |||||||||| ||||| ||||||  ||||||||||||||||||||||| |||  |||||||||      ||| |||| || ||||||  |||||    
T  42468766 aagaataatatggaagactctagaatactggggaataataaggaagctactagatact--actaaataa------gcactagggaagtcttaacttttct 42468675  T
Q  131 agatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcct 230  Q
    |||||||||||| | |||| |||||||||||||| | ||||| | |||||||||         ||||||||| ||||||||||||||| |||  ||||||    
T  42468674 agatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagccttcct 42468584  T
Q  231 agagtagtataaataaggctcaccactaagtgttttgca---------agaatcaagcattgaatcattcaaataatataacttttctttaaaaatatta 321  Q
    |||||||||||||||||||||||||   ||||||||| |         |  ||||||||||||| ||||||| ||||||||||||||||| | |||||||    
T  42468583 agagtagtataaataaggctcaccatctagtgttttggatactgaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatta 42468484  T
Q  322 gagtgtttctctattttctcta 343  Q
    ||||||||||||||||||||||    
T  42468483 gagtgtttctctattttctcta 42468462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 31 - 343
Target Start/End: Complemental strand, 42471095 - 42470791
Alignment:
Q  31 aagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttct 130  Q
    ||||| |||||||||| ||||| ||||||  ||||||||||||||||||||||| |||  |||||||||      ||| |||| || ||||||  |||||    
T  42471095 aagaataatatggaagactctagaatacttgggaataataaggaagctactagatact--actaaataa------gcactagggaagtcttaacttttct 42471004  T
Q  131 agatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcct 230  Q
    |||||||||||| | |||| |||||||||||||| | ||||| | |||||||||         ||||||||| ||||||||||||||| |||  ||||||    
T  42471003 agatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagccttcct 42470913  T
Q  231 agagtagtataaataaggctcaccactaagtgttttgca---------agaatcaagcattgaatcattcaaataatataacttttctttaaaaatatta 321  Q
    |||||||||||||||||||||||||   ||||||||| |         |  ||||||||||||| ||||||| ||||||||||||||||| | |||||||    
T  42470912 agagtagtataaataaggctcaccatctagtgttttggatactgaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatta 42470813  T
Q  322 gagtgtttctctattttctcta 343  Q
    ||||||||||||||||||||||    
T  42470812 gagtgtttctctattttctcta 42470791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 13776447 - 13776610
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgtt--------ttgcaagaatcaagca 280  Q
    |||||||||||||| ||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||||        ||  ||||||||||||    
T  13776447 aatgtttctagatatttctagtttgtaatgcagagccttcctagagtagtataaataaggctcaccgctaagtgtttaggcacattcaaagaatcaagca 13776546  T
Q  281 ttgaatcattcaaataatataacttttc-tttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  13776547 ttgaatcattcaagtaatataacttttcgtttgagaatattagagtgtttctctattttctcta 13776610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 13774149 - 13774313
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaaga----------atcaag 278  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||  | |          ||||||    
T  13774149 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaagcatcatcaag 13774248  T
Q  279 cattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  13774249 cattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctcta 13774313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 265
Target Start/End: Original strand, 8739249 - 8739467
Alignment:
Q  31 aagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttct 130  Q
    ||||| ||| |||| ||||||| |||||||  |||||||||||||||||||| |||| |||       |||| | ||| |||| ||||||||||||||||    
T  8739249 aagaataatgtggatgtctctagaatactaatgaataataaggaagctactatacacacta-------aaattatgcactagggaaatcttaatgtttct 8739341  T
Q  131 agatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcct 230  Q
    ||||||||||||||||||||||||||| |||||| | |||||   ||||||         |||||||||||| |||||||||||||||||||  ||||||    
T  8739342 agatccttctagtcatatgaactagagcatccatatctctagatttttctt---------tgtttctagatatttctagtttgtaatgtagagccttcct 8739432  T
Q  231 agagtagtataaataaggctcaccactaagtgttt 265  Q
    ||||| ||||||| |||||| ||||| ||||||||    
T  8739433 agagttgtataaacaaggcttaccaccaagtgttt 8739467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 126 - 343
Target Start/End: Complemental strand, 19429317 - 19429099
Alignment:
Q  126 tttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatc 225  Q
    ||||||||||||||||||  |||| |||||||||| ||| | ||||| | |||||||||         || |||||| ||||||||||||||| |||  |    
T  19429317 tttctagatccttctagttttatgtactagagtattcatatctctagacttttctttgt---------ttatagatatttctagtttgtaatggagagcc 19429227  T
Q  226 ttcctagagtagtataaataaggctcaccactaagtgttttg-------caagaa--tcaagcattgaatcattcaaataatata-acttttctttaaaa 315  Q
    | ||||||||||||||||||||||||||||| |||||||| |       |||||   |||||||||||||||||||| ||||||| |||||||||| | |    
T  19429226 tacctagagtagtataaataaggctcaccaccaagtgtttagatatattcaagatactcaagcattgaatcattcaagtaatatatacttttctttgaga 19429127  T
Q  316 atattagagtgtttctctattttctcta 343  Q
    ||||||||| ||||||||||||||||||    
T  19429126 atattagagagtttctctattttctcta 19429099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 96 - 266
Target Start/End: Complemental strand, 24908325 - 24908156
Alignment:
Q  96 ataaaataaagcattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgttt 195  Q
    ||||| |||||||||||||||||  |||  ||||||| || || ||||||||||||||| ||||||||| | | ||| | |||||| ||||| |||| ||    
T  24908325 ataaattaaagcattaggaaaatagtaacttttctaggtctttttagtcatatgaactaaagtatccatatctttagacttttctt-gtaataaatgctt 24908227  T
Q  196 ctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgtttt 266  Q
    ||| ||  ||||| ||||||| || ||| ||||||||||||||||||||| || ||||||| |||||||||    
T  24908226 ctacatctttctactttgtaacgtggaaccttcctagagtagtataaatagggttcaccaccaagtgtttt 24908156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 36379798 - 36379488
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||      ||| |||| || ||||||  |    
T  36379798 actaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaactt 36379707  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||| | |||| |||||||||||||| | ||| | | |||||||||         ||| ||||| ||||||||||||||| |||  ||    
T  36379706 ttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgt---------ttccagatatttctagtttgtaatggagagcct 36379616  T
Q  227 tcctagagtagtataaataaggctcaccac-taagtgttttg-------caaga--atcaagcattgaatcattcaaataatataacttttc-tttaaaa 315  Q
    |||||||||||||||||||||||||||||| |  ||||||||       |||||  |||||||||||||| |||||| |||||||||||||| ||| | |    
T  36379615 tcctagagtagtataaataaggctcaccacctgggtgttttggcatactcaagataatcaagcattgaatgattcaagtaatataacttttcctttgaga 36379516  T
Q  316 atattagagtgtttctctattttctcta 343  Q
    ||||||||||||||||||||||||||||    
T  36379515 atattagagtgtttctctattttctcta 36379488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 343
Target Start/End: Original strand, 4876849 - 4877153
Alignment:
Q  31 aagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttct 130  Q
    ||||| |||||||||| ||||| ||||||  ||||||||||||||||||||||| |||  |||||||||      ||| |||| || ||||||  |||||    
T  4876849 aagaataatatggaagactctagaatactggggaataataaggaagctactagaaact--actaaataa------gcactagggaagtcttaacttttct 4876940  T
Q  131 agatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcct 230  Q
    |||||||||||| | |||| |||| ||||||||| | ||||| | |||||||||         ||||||||| ||||||||||||||| |||  ||||||    
T  4876941 agatccttctaggcttatgtactatagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagccttcct 4877031  T
Q  231 agagtagtataaataaggctcaccactaagtgttttg-------caaga--atcaagcattgaatcattcaaataatataacttttctttaaaaatatta 321  Q
    |||||||||||||||||||||||||   |||||||||       |||||  |||||||||||||| |||||| |||||||||||||| || | |||||||    
T  4877032 agagtagtataaataaggctcaccatctagtgttttgacatactcaagataatcaagcattgaatgattcaagtaatataacttttccttgagaatatta 4877131  T
Q  322 gagtgtttctctattttctcta 343  Q
    ||||||||||||||||||||||    
T  4877132 gagtgtttctctattttctcta 4877153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 343
Target Start/End: Original strand, 4879177 - 4879481
Alignment:
Q  31 aagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttct 130  Q
    ||||| |||||||||| ||||| ||||||  ||||||||||||||||||||||| |||  |||||||||      ||| |||| || ||||||  |||||    
T  4879177 aagaataatatggaagactctagaatactggggaataataaggaagctactagaaact--actaaataa------gcactagggaagtcttaacttttct 4879268  T
Q  131 agatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcct 230  Q
    |||||||||||| | |||| |||| ||||||||| | ||||| | |||||||||         ||||||||| ||||||||||||||| |||  ||||||    
T  4879269 agatccttctaggcttatgtactatagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagccttcct 4879359  T
Q  231 agagtagtataaataaggctcaccactaagtgttttg-------caaga--atcaagcattgaatcattcaaataatataacttttctttaaaaatatta 321  Q
    |||||||||||||||||||||||||   |||||||||       |||||  |||||||||||||| |||||| |||||||||||||| || | |||||||    
T  4879360 agagtagtataaataaggctcaccatctagtgttttgacatactcaagataatcaagcattgaatgattcaagtaatataacttttccttgagaatatta 4879459  T
Q  322 gagtgtttctctattttctcta 343  Q
    ||||||||||||||||||||||    
T  4879460 gagtgtttctctattttctcta 4879481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 36377513 - 36377203
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||      ||| |||| || ||||||  |    
T  36377513 actaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaactt 36377422  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||| | |||| |||||||||||||| | |||   | |||||||||        |||| ||||| ||||| ||||||||| |||  ||    
T  36377421 ttctagatccttctaggcttatgtactagagtatccatatctctgaacttttctttgt--------tttc-agatatttctactttgtaatggagagcct 36377331  T
Q  227 tcctagagtagtataaataaggctcaccac-taagtgttttgc---------aagaatcaagcattgaatcattcaaataatataacttttc-tttaaaa 315  Q
    |||||||||||||||||||||||||||||| |||||||||||          || ||||||||||||||| |||||| |||||||||||||| ||| | |    
T  36377330 tcctagagtagtataaataaggctcaccacctaagtgttttggcatactcaaaataatcaagcattgaatgattcaagtaatataacttttcctttgaga 36377231  T
Q  316 atattagagtgtttctctattttctcta 343  Q
    ||||||||||||||||||||||||||||    
T  36377230 atattagagtgtttctctattttctcta 36377203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 343
Target Start/End: Complemental strand, 24519481 - 24519176
Alignment:
Q  31 aagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgtttct 130  Q
    ||||| |||||||||| ||||| ||||||  ||||||||||||||||||| ||| |||  |||||||||      ||| |||| || ||||||  |||||    
T  24519481 aagaataatatggaagactctagaatactggggaataataaggaagctaccagatact--actaaataa------gcactagggaagtcttaacttttct 24519390  T
Q  131 agatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcct 230  Q
    |||||||||||| | |||| || | ||||||||| | ||||| | |||||||||         ||||||||| ||||||||| ||||| |||  ||||||    
T  24519389 agatccttctaggcttatgtacaaaagtatccatatctctagacttttctttgt---------ttctagatatttctagtttataatggagagccttcct 24519299  T
Q  231 agagtagtataaataaggctcaccactaagtgttttgc-------aag---aatcaagcattgaatcattcaaataatataacttttctttaaaaatatt 320  Q
    |||||||||||||||||||||||||   |||||||||        |||   |||||||||||||||||||||| ||||||||||||||||  | ||||||    
T  24519298 agagtagtataaataaggctcaccatctagtgttttggcatactgaagcataatcaagcattgaatcattcaagtaatataacttttcttagagaatatt 24519199  T
Q  321 agagtgtttctctattttctcta 343  Q
    |||||||||||||||||||||||    
T  24519198 agagtgtttctctattttctcta 24519176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 21268460 - 21268143
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcattaggaaaatcttaatgt 126  Q
    ||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||        |||| || |||| |  |    
T  21268460 actaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacact--actaaataaaac-------tagggaagtcttgactt 21268370  T
Q  127 ttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatct 226  Q
    |||||||||||||||||  |||| |||| ||||||||| | ||||| | |||||||||         ||||||||| ||||||||||||||| |||  ||    
T  21268369 ttctagatccttctagttttatgtactaaagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagcct 21268279  T
Q  227 tcctagagtagtataaataaggctcaccactaagtgttttg----------------caaga--atcaagcattgaatcattcaaataatataacttttc 308  Q
    ||||||||||||||||||||||||||| ||  ||||||| |                |||||  |||||||||||||| |||||| ||||||||||||||    
T  21268278 tcctagagtagtataaataaggctcactacctagtgtttaggcataatccaaatactcaagataatcaagcattgaatgattcaagtaatataacttttc 21268179  T
Q  309 -tttaaaaatattagagtgtttctctattttctcta 343  Q
     ||| | |||||||||||||||||||||||||||||    
T  21268178 ctttgagaatattagagtgtttctctattttctcta 21268143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 18966452 - 18966221
Alignment:
Q  30 aaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaa-----gcattaggaaaatcttaat 124  Q
    |||||| |||| ||||||||||| |||||||   |||||||||| |||||||||| |||||||||||| |||||||     ||| |||||||||||||||    
T  18966452 aaagaataatagggaagtctctagaatactagataataataaggtagctactagatactctactaaatgaaataaaattaagcactaggaaaatcttaat 18966353  T
Q  125 gtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaat 224  Q
    ||||||||||||||||||||||| | |||||||||||||| | ||| | | ||||||          ||||||||||| ||||||| ||| ||| ||  |    
T  18966352 gtttctagatccttctagtcatacgtactagagtatccatatctcttgacttttctt---------ggtttctagatatttctagtgtgtcatggagtgt 18966262  T
Q  225 cttcctagagtagtataaataaggctcaccactaagtgttt 265  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  18966261 cttcctagagtagtataaataaggctcaccaccaagtgttt 18966221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 4530833 - 4530997
Alignment:
Q  189 aatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaaga----------atcaag 278  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||  | |          ||||||    
T  4530833 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaagcatcatcaag 4530932  T
Q  279 cattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  4530933 cattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctcta 4530997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 197 - 343
Target Start/End: Original strand, 4533138 - 4533294
Alignment:
Q  197 tagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaaga----------atcaagcattgaat 286  Q
    |||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||  | |          ||||||||||||||    
T  4533138 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaagcatcatcaagcattgaat 4533237  T
Q  287 cattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  4533238 cattcaagtaatataacttttctttgagaatattagagtgtttctctattttctcta 4533294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 267
Target Start/End: Original strand, 1701061 - 1701264
Alignment:
Q  69 taaggaagctactagacactctactaaataaaataaag-----cattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatcca 163  Q
    |||||||||| ||||||||| |||||||||| |||||      || |||| |||||||||  |||||||||||||||||||||||||| |||| ||||||    
T  1701061 taaggaagcttctagacactgtactaaataagataaaattaaacactagggaaatcttaacttttctagatccttctagtcatatgaattagattatcca 1701160  T
Q  164 tgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgt 263  Q
    | ||||||||| ||||||| ||||||||| || |||||  ||||| |||||  || |||  |||   ||||| |||||||||||| |||| || |||| |    
T  1701161 tatttctaggcttttctttttaatcaatgcttgtagatctttctattttgttttgcagagccttataagagtggtataaataaggatcactaccaagtat 1701260  T
Q  264 tttg 267  Q
    ||||    
T  1701261 tttg 1701264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 265
Target Start/End: Original strand, 8535464 - 8535661
Alignment:
Q  73 gaagctactagacactctactaaataa-----aataaagcattaggaaaatcttaatgtttct-agatccttctagtcatatgaactagagtatccatgt 166  Q
    |||||| ||||||||||||||||||||     ||||||||| ||| ||||||||| | ||| | |||||||||||||||||| ||||| ||||||||| |    
T  8535464 gaagcttctagacactctactaaataagataaaataaagcactagaaaaatcttatttttttttagatccttctagtcatataaactaaagtatccatat 8535563  T
Q  167 ttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttt 265  Q
     ||||| | |||| ||||||| |||| ||||| ||   |||| ||||||||||  |  ||| |||||||| |||||||  || ||||||  ||||||||    
T  8535564 ctctagacttttc-ttgtaataaatgcttctaaatctgtctactttgtaatgtgaagccttactagagtaatataaattgggttcaccatcaagtgttt 8535661  T

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Target: scaffold0050 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 93 - 343
Target Start/End: Original strand, 29251 - 29491
Alignment:
Q  93 taaataaaataaagcattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatg 192  Q
    ||||| |||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||  |||||| | ||||| | ||||||          |    
T  29251 taaattaaattaagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatctctagacttttctt----------g 29340  T
Q  193 tttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattca 292  Q
    |||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  | |  | | |||||||||||| |||| |    
T  29341 tttctagatatttttagtttgtaatggagagtcttcctagagtagtataaataaggctcaccaccaagtgcgtaggcatactcaagcattgaagcattta 29440  T
Q  293 aataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||  |  ||||||| | || ||||||| ||||||||||||||||||    
T  29441 aataataacaactttctttgagaacattagagagtttctctattttctcta 29491  T

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Target: scaffold0050; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 343
Target Start/End: Original strand, 31564 - 31806
Alignment:
Q  93 taaataaaataaagcattaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttct--aggcctttctttgtaatcaa 190  Q
    ||||| |||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||  |||||| | |||  || | ||||||             
T  31564 taaattaaattaagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatatctctagacttttctt--------- 31654  T
Q  191 tgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcatt 290  Q
     |||| |||||| ||||||||||||||| |||  |||||||||||||||||||||||||||||||| |||||| | |  | | |||||||||| | ||||    
T  31655 -gtttttagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccaccaagtgtgtaggcatactcaagcattgtagcatt 31753  T
Q  291 caaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||||  |  ||||||| | || ||||||| ||||||||||||||||||    
T  31754 caaataataacaaatttctttgagaacattagagagtttctctattttctcta 31806  T

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Target: scaffold0599 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 191 - 343
Target Start/End: Original strand, 1616 - 1778
Alignment:
Q  191 tgtttctagataattctagtttgtaatgtagaatcttcctagagtagtataaataaggctcaccactaagtgttttg-------caagaatca---agca 280  Q
    |||||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||||||||  |||||||||       |||| ||||   ||||    
T  1616 tgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagcatcatcaagca 1715  T
Q  281 ttgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||||||    
T  1716 ttgaatcattcaagtaatataacttttctttgaggatattagagtgtttctctattttctcta 1778  T

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Target: scaffold1361 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 1 - 117
Alignment:
Q  236 agtataaataaggctcaccactaagtgttttgc--------aagaatcaagcattgaatcattcaaataatataacttttc-tttaaaaatattagagtg 326  Q
    |||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||| |||||||||||||| ||| | ||||||| ||||    
T  1 agtataaataaggctcaccactaagtgtttaggcacattcaaagaatcaagcattgaatcattcaagtaatataacttttcgtttgagaatattaaagtg 100  T
Q  327 tttctctattttctcta 343  Q
    |||||||||||||||||    
T  101 tttctctattttctcta 117  T

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Target: scaffold0008 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 88438 - 88508
Alignment:
Q  273 atcaagcattgaatcattcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    ||||| ||||||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  88438 atcaaacattgaatcattcaagtaatataacttttctttgagaatattagagtctttctctattttctcta 88508  T

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Target: scaffold0312 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 11301 - 11358
Alignment:
Q  27 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctactaga 84  Q
    ||||||||| |||||||||||||||| |||  ||  ||||||||||||||||||||||    
T  11301 actaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 11358  T

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Target: scaffold0098 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 3785 - 3730
Alignment:
Q  288 attcaaataatataacttttctttaaaaatattagagtgtttctctattttctcta 343  Q
    |||||||||||||||  ||||||| | |||||||||| ||| ||||||||||||||    
T  3785 attcaaataatataaactttctttgagaatattagagagttactctattttctcta 3730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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