View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14790_high_2 (Length: 354)
Name: NF14790_high_2
Description: NF14790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14790_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 42141136 - 42141417
Alignment:
| Q |
1 |
atttcatccccagaacgaaaacaaaacctacattcctccacttcaggatcttcctcatcagaagtagcatcttctctcctcttcacataaacatcatccc |
100 |
Q |
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| T |
42141136 |
atttcatccccagaacgaaaacaaaacctacattcctccacttcaggatcttcctcatcagaagtagcatcttctctcctcttcacataaacatcatccc |
42141235 |
T |
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| Q |
101 |
caacttcaaattcaccgccgtcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagctcttgtaacaaccattttctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42141236 |
caacttcaaattcaccgccgtcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagcccttgtaacaaccattttctc |
42141335 |
T |
|
| Q |
201 |
aaccttaacctcgttcttcctctttctcttcttagtttccgattgatccggcgacgtcggagcgaacgaaaccttaacggaa |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42141336 |
aaccttaacctcgttcttcctctttctcttcttagtttccgattgatccggcgatgtcggagcgaacgaaaccttaacggaa |
42141417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23660107 - 23660343
Alignment:
| Q |
1 |
atttcatccccagaacg---aaaacaaaacctacattcctccacttcaggatcttcctcatcagaagtagcatcttctctcctcttcacataaacatcat |
97 |
Q |
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|||||||||||| |||| |||| |||||||||||||||||| |||||||||||| ||| || ||||||||||||||| |||||||||||||||| |
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| T |
23660107 |
atttcatccccaaaacggaaaaaaaaaaacctacattcctccaattcaggatcttcttca---gaggtagcatcttctctc---ttcacataaacatcat |
23660200 |
T |
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| Q |
98 |
ccccaacttcaaattcaccgccgtcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagctcttgtaacaaccatttt |
197 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
23660201 |
tcccaacttcaaattcaccgccatcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagctcctgtaacaaccgtttt |
23660300 |
T |
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| Q |
198 |
ctcaaccttaacctcgttcttcctctttctcttcttagtttcc |
240 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23660301 |
ctcaacactaacctcgttcttcctctttctcttcttagtttcc |
23660343 |
T |
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