View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14791_high_12 (Length: 301)

Name: NF14791_high_12
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14791_high_12
NF14791_high_12
[»] chr2 (2 HSPs)
chr2 (12-215)||(16311973-16312166)
chr2 (138-212)||(41554301-41554375)
[»] chr7 (1 HSPs)
chr7 (118-214)||(21420959-21421055)
[»] chr4 (2 HSPs)
chr4 (118-214)||(19718188-19718284)
chr4 (118-212)||(55248340-55248434)
[»] chr6 (1 HSPs)
chr6 (158-200)||(20972004-20972046)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 16312166 - 16311973
Alignment:
Q  12 atcatactcctcctcttcaaaaccccgctaacatgaacgcagttatgacaaggctctcaaaggaaaaagtgaacattagacggtactttatgataaatag 111  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||           ||||||||    
T  16312166 atcatactcctcctcttcaaaaccccgcgaacatgaacgcagttatgacaaggctcttaaaggaaaaagtgaacattagaca----------ataaatag 16312077  T
Q  112 gaaccgagttctcagaaattagtgttcttagatacaactcctttggatttatcctctatgttgcttgctgttgcgctagacatctcttttattaggcatt 211  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  16312076 gaaccgagttttcagacattagtgttcttagatacaactcctttggatttatcctctatgttgtttgctgatgcgctagacatctcttttattaggcatt 16311977  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 41554301 - 41554375
Alignment:
Q  138 cttagatacaactcctttggatttatcctctatgttgcttgctgttgcgctagacatctcttttattaggcatta 212  Q
    |||||||||| |||||| | |||||||||| || ||| |||||| ||||||||||||||||||| ||||||||||    
T  41554301 cttagatacagctccttcgaatttatcctccatattgtttgctgatgcgctagacatctcttttgttaggcatta 41554375  T

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Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 21421055 - 21420959
Alignment:
Q  118 agttctcagaaattagtgttcttagatacaactcctttggatttatcctctatgttgcttgctgttgcgctagacatctcttttattaggcattagc 214  Q
    |||||| ||||||||||||| ||||||||||||||||   |||||||||| |||||||||| || ||||||||||||||||||| ||||| ||||||    
T  21421055 agttctgagaaattagtgtttttagatacaactccttcatatttatcctccatgttgcttgttgatgcgctagacatctcttttgttaggtattagc 21420959  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 19718188 - 19718284
Alignment:
Q  118 agttctcagaaattagtgttcttagatacaactcctttggatttatcctctatgttgcttgctgttgcgctagacatctcttttattaggcattagc 214  Q
    |||||| ||||||||||| | |||||||||||||||  | | |||||||| || ||||||| || |||| ||  ||||||||||| |||||||||||    
T  19718188 agttctgagaaattagtgattttagatacaactcctccgaacttatcctccatattgcttggtgatgcgttaatcatctcttttactaggcattagc 19718284  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 55248434 - 55248340
Alignment:
Q  118 agttctcagaaattagtgttcttagatacaactcctttggatttatcctctatgttgcttgctgttgcgctagacatctcttttattaggcatta 212  Q
    |||||| ||||||||||| | ||||||||| ||||| |  |||||||||| ||||||||||||  ||| ||   |||||||||| ||||||||||    
T  55248434 agttctgagaaattagtgcttttagatacagctcctctaaatttatcctcaatgttgcttgctaatgcactgagcatctcttttgttaggcatta 55248340  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 20972046 - 20972004
Alignment:
Q  158 atttatcctctatgttgcttgctgttgcgctagacatctcttt 200  Q
    |||||||||||||||| |||| ||||||| |||||||||||||    
T  20972046 atttatcctctatgtttcttgatgttgcgatagacatctcttt 20972004  T

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