View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14791_high_16 (Length: 269)

Name: NF14791_high_16
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14791_high_16
NF14791_high_16
[»] chr7 (2 HSPs)
chr7 (1-269)||(14737435-14737703)
chr7 (37-223)||(14743991-14744179)
[»] chr5 (6 HSPs)
chr5 (1-269)||(17589075-17589350)
chr5 (42-223)||(17583131-17583315)
chr5 (144-209)||(25606618-25606683)
chr5 (144-223)||(38233409-38233488)
chr5 (143-185)||(16469521-16469563)
chr5 (67-99)||(39850396-39850428)
[»] chr1 (4 HSPs)
chr1 (144-223)||(10057665-10057744)
chr1 (67-107)||(42560989-42561029)
chr1 (147-222)||(2750124-2750199)
chr1 (67-107)||(40368064-40368104)
[»] chr3 (4 HSPs)
chr3 (164-221)||(23688147-23688204)
chr3 (164-221)||(24060384-24060441)
chr3 (144-213)||(27521843-27521912)
chr3 (144-213)||(27522733-27522802)
[»] chr2 (3 HSPs)
chr2 (45-106)||(11852669-11852729)
chr2 (162-223)||(22829909-22829970)
chr2 (175-223)||(28594677-28594725)
[»] chr8 (4 HSPs)
chr8 (144-223)||(23237972-23238051)
chr8 (144-269)||(35066161-35066291)
chr8 (67-108)||(4438288-4438329)
chr8 (67-107)||(16337999-16338039)
[»] chr4 (1 HSPs)
chr4 (155-213)||(22119377-22119435)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 14737435 - 14737703
Alignment:
Q  1 acactagttatatataaaggaaatatgttgttttgagtgacttgttcacttacagttataccattgaaacaaatttgtctataataatgttttattgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737435 acactagttatatataaaggaaatatgttgttttgagtgacttgttcacttacagttataccattgaaacaaatttgtctataataatgttttattgttg 14737534  T
Q  101 gtgtcatacgttcaacgatttggccccctctaagaaaaggctctgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737535 gtgtcatacgttcaacgatttggccccctctaagaaaaggctctgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgtt 14737634  T
Q  201 gatttgtttcttctacttcttcgcccggtataaaagggacatcaacacctttactttgaataagatatt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737635 gatttgtttcttctacttcttcgcccggtataaaagggacatcaacacctttactttgaataagatatt 14737703  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 14743991 - 14744179
Alignment:
Q  37 gtgacttgttcacttacagttataccattgaaacaaatttgtctataataatgttttattgttggtgtcatacgttcaac--gatttggccccctctaag 134  Q
    |||||||||| |||| | |||||||| ||||||||||||  | ||||| |||||| |||||||||||||||  ||||||   ||||||||||| ||||||    
T  14743991 gtgacttgtttactttccgttatacccttgaaacaaattattttataagaatgttgtattgttggtgtcatt-gttcaaaaagatttggccccttctaag 14744089  T
Q  135 aaaaggctctgctcaaccaccatt-gggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcg 223  Q
    |||| |   |||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  14744090 aaaatgtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtaggaattgagtttgttgatttgtttcttctgcttcttcg 14744179  T

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Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 17589350 - 17589075
Alignment:
Q  1 acactagttatatataaaggaaatatgttgttttgagtgacttgttcacttacagttataccattgaaacaaatttgtctataataatgttttattgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  17589350 acactagttatatataaaggaaatatgttgttttgagtgacttgttcactttcagttataccattgaaacaaatttgtctataacaatgttttattgttg 17589251  T
Q  101 gtgtcatacgttcaa--cgatttggccccctctaagaaaaggctctgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttg 198  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17589250 gtgtcatacgttcaaaacgatttggccccctctaagaaaaggctctgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttg 17589151  T
Q  199 ttgatttgtttcttctacttcttcgccc-----ggtataaaagggacatcaacacctttactttgaataagatatt 269  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  17589150 ttgatttgtttcttctacttcttcgcccgataaggtataaaagggacatcaacacctttactttgaataagatatt 17589075  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 17583315 - 17583131
Alignment:
Q  42 ttgttcacttacagttataccattgaaacaaatttgtctataataatgttttattgttggtgtcatacgttcaac--gatttggccccctctaagaaaag 139  Q
    ||||| |||| |||||||||| ||||||||||||  | ||||| |||||| ||||||||||||||| |||||||   ||||||||||| ||||||||||     
T  17583315 ttgtttacttccagttatacccttgaaacaaattattttataagaatgttgtattgttggtgtcattcgttcaaaaagatttggccccttctaagaaaat 17583216  T
Q  140 gctctgctcaaccaccatt-gggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcg 223  Q
    |   |||||||||||| || |||||||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||    
T  17583215 gtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtgggaattgagttggttgatttgtttcttctgcttcttcg 17583131  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 25606618 - 25606683
Alignment:
Q  144 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgttt 209  Q
    |||||||||  | ||||||||||| ||||||||||||||||||||||| | |||||||| ||||||    
T  25606618 tgctcaaccgtccttgggttcacccttggatcgagtgttgtagggattaaatttgttgagttgttt 25606683  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 38233488 - 38233409
Alignment:
Q  144 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcg 223  Q
    ||||||||| || |||||| |||| ||||| ||||||||||||| |||||||||  | | ||||||| ||| ||||||||    
T  38233488 tgctcaaccgcccttgggtgcacccttggaacgagtgttgtaggaattgagtttacttagttgtttcctctgcttcttcg 38233409  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 16469521 - 16469563
Alignment:
Q  143 ctgctcaaccaccattgggttcacctttggatcgagtgttgta 185  Q
    ||||||||||||| |||||||| || |||||||||||||||||    
T  16469521 ctgctcaaccacccttgggttcccccttggatcgagtgttgta 16469563  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 39850396 - 39850428
Alignment:
Q  67 aaacaaatttgtctataataatgttttattgtt 99  Q
    ||||||||||||||||||||||||| |||||||    
T  39850396 aaacaaatttgtctataataatgttatattgtt 39850428  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 10057665 - 10057744
Alignment:
Q  144 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcg 223  Q
    |||||||||||| ||||||||||||||| | |||||||| |||| ||||| ||| |||  ||||||||||||||||||||    
T  10057665 tgctcaaccacctttgggttcacctttgaaacgagtgttataggaattgattttcttgggttgtttcttctacttcttcg 10057744  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 42561029 - 42560989
Alignment:
Q  67 aaacaaatttgtctataataatgttttattgttggtgtcat 107  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  42561029 aaacaaatttttctataataatgttatattgttggtgtcat 42560989  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 2750124 - 2750199
Alignment:
Q  147 tcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttc 222  Q
    |||||| || ||||||||||| |||||| |||||||||| | ||||||||||  || ||||||||| | |||||||    
T  2750124 tcaacctcccttgggttcacccttggattgagtgttgtaagaattgagtttggagagttgtttcttatgcttcttc 2750199  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 40368064 - 40368104
Alignment:
Q  67 aaacaaatttgtctataataatgttttattgttggtgtcat 107  Q
    |||||||||| |||||| ||||||| |||||||||||||||    
T  40368064 aaacaaatttttctatattaatgttatattgttggtgtcat 40368104  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 23688204 - 23688147
Alignment:
Q  164 cacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttctt 221  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||  ||||||||||    
T  23688204 cacctttggatcgagtgttgtaggaattgaatttgttgacttgttttgtctacttctt 23688147  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 24060441 - 24060384
Alignment:
Q  164 cacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttctt 221  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||  ||||||||||    
T  24060441 cacctttggatcgagtgttgtaggaattgaatttgttgacttgttttgtctacttctt 24060384  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 27521912 - 27521843
Alignment:
Q  144 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttc 213  Q
    ||||||||| || ||||||| | ||||||||||||||||||||| |||||||||||| | || |||||||    
T  27521912 tgctcaaccgcctttgggtttatctttggatcgagtgttgtaggaattgagtttgtttagttttttcttc 27521843  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 27522802 - 27522733
Alignment:
Q  144 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttc 213  Q
    ||||||||| || ||||||| | ||||||||||||||||||||| |||||||||||| | || |||||||    
T  27522802 tgctcaaccgcctttgggtttatctttggatcgagtgttgtaggaattgagtttgtttagttttttcttc 27522733  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 11852729 - 11852669
Alignment:
Q  45 ttcacttacagttataccattgaaacaaatttgtctataataatgttttattgttggtgtca 106  Q
    ||||||| |||||||||| || |||||||||||||||||| |||||| ||||||||||||||    
T  11852729 ttcacttccagttataccgtt-aaacaaatttgtctataaaaatgttatattgttggtgtca 11852669  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 22829970 - 22829909
Alignment:
Q  162 ttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcg 223  Q
    ||||||||||||||||||||| |||| ||| |||||| ||| || |||||||||||||||||    
T  22829970 ttcacctttggatcgagtgttataggaattcagtttgatgagttatttcttctacttcttcg 22829909  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 28594677 - 28594725
Alignment:
Q  175 cgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcg 223  Q
    ||||||||||||| ||||| ||| |||| ||||||||||||||||||||    
T  28594677 cgagtgttgtaggtattgactttattgagttgtttcttctacttcttcg 28594725  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 23238051 - 23237972
Alignment:
Q  144 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcg 223  Q
    |||||||||||| ||| |||||| ||| |||| ||||||||||  ||||| |||||||| ||||||||||| ||| ||||    
T  23238051 tgctcaaccacccttgtgttcacgtttagatctagtgttgtagtaattgaatttgttgagttgtttcttctgcttattcg 23237972  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 269
Target Start/End: Original strand, 35066161 - 35066291
Alignment:
Q  144 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccggta-----taaaaggg 238  Q
    |||||||||  | |||||||||   ||||||||||||||||||| |||||||||  | ||||||||||| | |||||||| | | ||     ||||||||    
T  35066161 tgctcaaccgtccttgggttcattcttggatcgagtgttgtaggaattgagtttactaatttgtttcttttgcttcttcgtcggataaggcgtaaaaggg 35066260  T
Q  239 acatcaacacctttactttgaataagatatt 269  Q
    || |||||| |||||| ||||| ||||||||    
T  35066261 acgtcaacatctttaccttgaagaagatatt 35066291  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 4438288 - 4438329
Alignment:
Q  67 aaacaaatttgtctataataatgttttattgttggtgtcata 108  Q
    |||||||||| | |||||||||||| ||||||||||||||||    
T  4438288 aaacaaatttttttataataatgttatattgttggtgtcata 4438329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 16337999 - 16338039
Alignment:
Q  67 aaacaaatttgtctataataatgttttattgttggtgtcat 107  Q
    |||||||||||||||||| |||| | |||||||||||||||    
T  16337999 aaacaaatttgtctataagaatgatatattgttggtgtcat 16338039  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 22119435 - 22119377
Alignment:
Q  155 cattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttc 213  Q
    ||||| |||| || ||||||||| ||||||||| |||||||||||| | ||||||||||    
T  22119435 cattgagttcgcccttggatcgaatgttgtaggaattgagtttgtttagttgtttcttc 22119377  T

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