View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14791_high_21 (Length: 227)
Name: NF14791_high_21
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14791_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 50899320 - 50899407
Alignment:
| Q |
17 |
cacaattcgattcaccttttcaaactcaacctcgataaacgctgccatgagtttcttttaaccacctgtaggtatagttatatttgcg |
104 |
Q |
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| T |
50899320 |
cacaattcgattcaccttttcaaactcaacctcgataaacgctgccatgagtttcttttaaccacctgtaggtatagttatatttgcg |
50899407 |
T |
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Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 50899595 - 50899674
Alignment:
| Q |
130 |
gtctctattattataacatatgctaaatatcattatacaatctccacctccaggtagggaacagcttgatgcggcggtga |
209 |
Q |
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| T |
50899595 |
gtctctattattataatatctgctaaatatcattatacaatctccacctccaggtagggaacagcttgatgcggcggtga |
50899674 |
T |
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