View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14791_high_4 (Length: 382)

Name: NF14791_high_4
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14791_high_4
NF14791_high_4
[»] chr5 (2 HSPs)
chr5 (18-100)||(4175383-4175465)
chr5 (118-210)||(4175751-4175843)
[»] chr8 (1 HSPs)
chr8 (211-255)||(40948354-40948398)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 4175383 - 4175465
Alignment:
Q  18 cacaatagcccatacatttcataaatatttattgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175383 cacaatagcccatacatttcataaatatttgttgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac 4175465  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 4175751 - 4175843
Alignment:
Q  118 ttctatgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgccgataacattcttcttggtctcaattccta 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  4175751 ttctttgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgtcgataacactcttcttagtctcaattccta 4175843  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 40948354 - 40948398
Alignment:
Q  211 gggaatggattgtctcctgtataaatgcctccagttttctcctgt 255  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||    
T  40948354 gggaatggattttctccggtgtaaatgcctccagttttctcctgt 40948398  T

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