View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14791_low_15 (Length: 276)

Name: NF14791_low_15
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14791_low_15
NF14791_low_15
[»] chr8 (5 HSPs)
chr8 (21-231)||(36678750-36678962)
chr8 (239-276)||(18009693-18009730)
chr8 (239-276)||(2800099-2800136)
chr8 (239-276)||(10310362-10310399)
chr8 (239-276)||(35253802-35253839)
[»] scaffold0308 (1 HSPs)
scaffold0308 (239-276)||(7156-7193)
[»] chr7 (1 HSPs)
chr7 (239-276)||(24397025-24397062)
[»] chr6 (4 HSPs)
chr6 (239-276)||(9064946-9064983)
chr6 (239-276)||(14981680-14981717)
chr6 (240-276)||(24470370-24470406)
chr6 (240-276)||(29284198-29284234)
[»] chr5 (2 HSPs)
chr5 (239-276)||(20735153-20735190)
chr5 (239-276)||(37417108-37417145)
[»] chr4 (5 HSPs)
chr4 (239-276)||(8690294-8690331)
chr4 (239-276)||(9693042-9693079)
chr4 (239-276)||(14149873-14149910)
chr4 (239-276)||(28520709-28520746)
chr4 (239-276)||(48968188-48968225)
[»] chr3 (1 HSPs)
chr3 (239-276)||(27183659-27183696)
[»] chr2 (1 HSPs)
chr2 (239-276)||(43871033-43871070)
[»] chr1 (5 HSPs)
chr1 (239-276)||(2044942-2044979)
chr1 (239-276)||(13870059-13870096)
chr1 (239-276)||(35111729-35111766)
chr1 (239-276)||(40678903-40678940)
chr1 (239-276)||(47763363-47763400)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 36678962 - 36678750
Alignment:
Q  21 gagatagcacgtgttttgtaagaaagccaagaaaacatatgttggcataatgtagacaattgggtgacacttattaacatatggtggggcagatttgtta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36678962 gagatagcacgtgttttgtaagaaagccaagaaaacatatgttggcataatgtagacaattgggtgacacttattaacatatggtggggcagatttgtta 36678863  T
Q  121 attgctgtatagtat--atattggataagtgacacagacgtaaaaaagtgtcaaattgtttatttcttcattttttcatcatatctaatatattggataa 218  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36678862 attgctgtatagtatatatattggataagtgacacagacgtaaaaaagtatcaaattgtttatttcttcattttttcatcatatcttatatattggataa 36678763  T
Q  219 gtgacacatacta 231  Q
    |||||||||||||    
T  36678762 gtgacacatacta 36678750  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 18009693 - 18009730
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  18009693 gtcaggtagcctaatggctagaaattcacttttaaagt 18009730  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 2800136 - 2800099
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  2800136 gtcaggtagcctagtggctagaaattcacttttaaagt 2800099  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 10310399 - 10310362
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  10310399 gtcagatagtctaatggctagaaattcacttttaaagt 10310362  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 35253802 - 35253839
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  35253802 gtcaggtagcctagtggctagaaattcacttttaaagt 35253839  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 7193 - 7156
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  7193 gtcaggtagcctagtggctagaaattcacttttaaagt 7156  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 24397062 - 24397025
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  24397062 gtcaggtagcctagtggctagaaattcacttttaaagt 24397025  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 9064983 - 9064946
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  9064983 gtcaggtagcctagtggctagaaattcacttttaaagt 9064946  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 14981680 - 14981717
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  14981680 gtcaggtagcctagtggctagaaattcacttttaaagt 14981717  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 24470370 - 24470406
Alignment:
Q  240 tcagctagcctaatggctagaaattcacttttaaagt 276  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  24470370 tcaggtagcctattggctagaaattcacttttaaagt 24470406  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 29284234 - 29284198
Alignment:
Q  240 tcagctagcctaatggctagaaattcacttttaaagt 276  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  29284234 tcaggtagcctagtggctagaaattcacttttaaagt 29284198  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 20735153 - 20735190
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  20735153 gtcaggtagcctagtggctagaaattcacttttaaagt 20735190  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 37417108 - 37417145
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  37417108 gtcagatagcctagtggctagaaattcacttttaaagt 37417145  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 8690331 - 8690294
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  8690331 gtcaggtagcctagtggctagaaattcacttttaaagt 8690294  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 9693079 - 9693042
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  9693079 gtcaggtagcctagtggctagaaattcacttttaaagt 9693042  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 14149910 - 14149873
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  14149910 gtcaggtagcctagtggctagaaattcacttttaaagt 14149873  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 28520709 - 28520746
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  28520709 gtcaggtagcctagtggctagaaattcacttttaaagt 28520746  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 48968188 - 48968225
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  48968188 gtcaggtagcctagtggctagaaattcacttttaaagt 48968225  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 27183659 - 27183696
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  27183659 gtcaggtagcctagtggctagaaattcacttttaaagt 27183696  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 43871070 - 43871033
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  43871070 gtcaggtagcctagtggctagaaattcacttttaaagt 43871033  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 2044942 - 2044979
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  2044942 gtcaggtagcctagtggctagaaattcacttttaaagt 2044979  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 13870059 - 13870096
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  13870059 gtcaggtagcctagtggctagaaattcacttttaaagt 13870096  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 35111766 - 35111729
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    |||||||||| || ||||||||||||||||||||||||    
T  35111766 gtcagctagcgtagtggctagaaattcacttttaaagt 35111729  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 40678940 - 40678903
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  40678940 gtcaggtagcctagtggctagaaattcacttttaaagt 40678903  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 47763363 - 47763400
Alignment:
Q  239 gtcagctagcctaatggctagaaattcacttttaaagt 276  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  47763363 gtcaggtagcctagtggctagaaattcacttttaaagt 47763400  T

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