View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14791_low_19 (Length: 244)
Name: NF14791_low_19
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14791_low_19 |
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| [»] chr6 (7 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 2369282 - 2369057
Alignment:
| Q |
19 |
agatcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369282 |
agatcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcata |
2369183 |
T |
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| Q |
119 |
tcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaa |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2369182 |
tcaataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattccagggcaaa |
2369083 |
T |
|
| Q |
219 |
ttcttctaccacctccaaatggtaat |
244 |
Q |
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| |||||||||||||||||||||||| |
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| T |
2369082 |
tccttctaccacctccaaatggtaat |
2369057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 2363533 - 2363311
Alignment:
| Q |
22 |
tcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatca |
121 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
2363533 |
tcacataatttcataacaattcgaagacaaacgtggctttataagaatctcaagaggagttgttttggtgttgcttaatccaaaagtttcattcatatca |
2363434 |
T |
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| Q |
122 |
ataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattc |
221 |
Q |
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| T |
2363433 |
ataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatcc |
2363334 |
T |
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| Q |
222 |
ttctaccacctccaaatggtaat |
244 |
Q |
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||||||||||||||||||||||| |
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| T |
2363333 |
ttctaccacctccaaatggtaat |
2363311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 2307769 - 2307550
Alignment:
| Q |
21 |
atcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatc |
120 |
Q |
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||||||| |||||||| ||||| ||||||| |||| ||||| ||||||| ||||||||| | ||| ||||| ||||||||||| | |||| ||||||| |
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| T |
2307769 |
atcacatgatttcataacaattgatagacaaatgtggtttaatgagaatcttaagaggagtagctttagtgtttgttaatccaaaggattcactcatatc |
2307670 |
T |
|
| Q |
121 |
aataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaatt |
220 |
Q |
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|| | ||||| | |||||||| ||| ||||||||||||||||||||||| | | | ||||||| ||||||||| |||| ||| ||||| ||||| || |
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| T |
2307669 |
aacaagttcaggggttggatttaagatatcaaaggaatgcaaaaaactagctagaatgaaatgcagcatttgaagtccaagtgatattccagggcatatc |
2307570 |
T |
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| Q |
221 |
cttctaccacctccaaatgg |
240 |
Q |
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|||||||||| ||||||||| |
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| T |
2307569 |
cttctaccacttccaaatgg |
2307550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 2261160 - 2261295
Alignment:
| Q |
108 |
tttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacat |
207 |
Q |
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||||||||||||||| ||||||||| ||| |||||| ||||||||||| || |||||| |||||||||||||||| | ||| ||||| ||||| || || |
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| T |
2261160 |
tttcagtcatatcaacaggttcactagatccatttacaatttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaagatat |
2261259 |
T |
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| Q |
208 |
tcctgggcaaattcttctaccacctccaaatggtaa |
243 |
Q |
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|||||| || || |||||||||| |||||||||||| |
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| T |
2261260 |
tcctggacatatccttctaccacttccaaatggtaa |
2261295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 2340450 - 2340227
Alignment:
| Q |
21 |
atcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatc |
120 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||| ||||| ||||||||||| ||||| | ||||| || ||| ||||||| | |||| ||||||| |
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| T |
2340450 |
atcacataaactcataacaattgtgagacaaacgtggtttaatgagaatctcaagtggagtagctttggaattcgttgatccaaaggcttcactcatatc |
2340351 |
T |
|
| Q |
121 |
aataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaatt |
220 |
Q |
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|| || ||| || |||||||| ||| ||||||||||||||||||||||| | || ||||||| ||||||||| ||||| || ||||| || || | |
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| T |
2340350 |
aacagcatcaggtgttggatttaagatatcaaaggaatgcaaaaaactagctagggtgaaatgcagcatttgaagtccaaacgatattccaggacatttc |
2340251 |
T |
|
| Q |
221 |
cttctaccacctccaaatggtaat |
244 |
Q |
| |
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|||||||||| ||||||||||||| |
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| T |
2340250 |
cttctaccacttccaaatggtaat |
2340227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 2351870 - 2351682
Alignment:
| Q |
54 |
gtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaa |
153 |
Q |
| |
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|||| ||||| ||||||||||| ||||| | ||||||||| | ||||||||| |||||||||||||| | || | || |||||||| ||| ||||| |
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| T |
2351870 |
gtggtttaatgagaatctcaagtggagtagctttggtgtttgctaatccaaattcttcagtcatatcaacaagtccgggtgttggatttaagatatcaaa |
2351771 |
T |
|
| Q |
154 |
ggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggta |
242 |
Q |
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||||||||||||||| || | ||| |||||||| |||||||| ||||| || ||| | || || | |||||||||| ||||||||||| |
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| T |
2351770 |
ggaatgcaaaaaacttgctagagtgaaatgcacaatttgaagtccaaaagatattgcaggacacttccttctaccacttccaaatggta |
2351682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 2358216 - 2357997
Alignment:
| Q |
24 |
acataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaat |
123 |
Q |
| |
|
||||| |||| |||||||| |||||||| ||| |||| ||||||||||| || || | ||||| | || |||||||| ||| ||||||||||| |
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| T |
2358216 |
acatagtttcgtagcaattaacagacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaat |
2358117 |
T |
|
| Q |
124 |
aggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattctt |
223 |
Q |
| |
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||| ||||| |||| || | ||||||||| |||||||||||| |||||||| ||||||||| ||||| || ||||| || ||| | || ||||| ||| |
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| T |
2358116 |
aggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatatttcaggacaaatcctt |
2358017 |
T |
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| Q |
224 |
ctaccacctccaaatggtaa |
243 |
Q |
| |
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||||||| |||||||||||| |
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| T |
2358016 |
ctaccacttccaaatggtaa |
2357997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 4306222 - 4306009
Alignment:
| Q |
31 |
ttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttca |
130 |
Q |
| |
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|||||| ||||| |||| |||||| ||||||||||||||||| || ||||||| ||| |||||| | |||||||| |||||||||||||||||||||| |
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| T |
4306222 |
ttcataacaattagaaggcaaacgaggcttaataagaatctctagtggagttgccttgtggttggtgattccaaaagcttcagtcatatcaataggttca |
4306123 |
T |
|
| Q |
131 |
cttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccac |
230 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||||||| ||||| |||||||||| |
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| T |
4306122 |
gctgatgcctttgagatttcaaaggaatgcaaaaaactagccaaagataaatgcaccatttgaaggccataagatattcctggacaaatccttctaccac |
4306023 |
T |
|
| Q |
231 |
ctccaaatggtaat |
244 |
Q |
| |
|
||||||||||||| |
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| T |
4306022 |
ttccaaatggtaat |
4306009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 5804059 - 5804254
Alignment:
| Q |
46 |
agacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacg |
145 |
Q |
| |
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|||||||||||| ||||| ||||| ||||| ||||| | |||| | || ||||||||||| |||||||||||||||| ||||| || |||||||| | |
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| T |
5804059 |
agacaaacgtggtttaatgagaatttcaagtggagtagctttgctatttgttaatccaaattcttcagtcatatcaataagttcaggtgttggatttaag |
5804158 |
T |
|
| Q |
146 |
atttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggt |
241 |
Q |
| |
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|| ||||||||||||||||||||||| | ||| ||||||||||||||||| ||||| | ||||| || || | |||||||||| |||||||||| |
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| T |
5804159 |
atatcaaaggaatgcaaaaaactagctagagtaaaatgcaccatttgaagtccaaaacatattccaggacatttccttctaccacttccaaatggt |
5804254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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