View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14791_low_2 (Length: 446)
Name: NF14791_low_2
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14791_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 145 - 435
Target Start/End: Original strand, 30348030 - 30348321
Alignment:
| Q |
145 |
tgtagttgttatatctccattcaagggttgcattttttggtggatcaattaattaagctccaa-ttccaattgagatattcacctatcctaagaaagaat |
243 |
Q |
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| T |
30348030 |
tgtagttgttatatctccattcaagggttgcattttttggtggatcaattaattcagctccaaattccaattgagatattcacctttcctaagaaataat |
30348129 |
T |
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| Q |
244 |
gagacagagaatggaaaggcttgttattcttcctttctcagctggttgtatctctgaggtcagtgttgctgttggtgttccacatccaagaagatcaaaa |
343 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30348130 |
gagacagagaatggaaaggcttgtcattcttcctttctcagctggttgtatctctgaggccagtgttgctgttggtgttccacatccaagaagatcaaaa |
30348229 |
T |
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| Q |
344 |
cctgcagagactaattcaccacatgatgcaataagtctcttcctatctcttttacatgctaatcacaacattaattatttgcattacttccc |
435 |
Q |
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| T |
30348230 |
cctgcagagactaattcaccacatgatgcaataagtctcttcctatctcttttacgtgctaatcacaacattaattatttgcattacttccc |
30348321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 30347902 - 30347976
Alignment:
| Q |
18 |
tatgtatacgtaatcatagcatgcttcacaacaaattgaatcctaagggagta-cccatccccatgtgtgtctta |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30347902 |
tatgtatacgtaatcatagcatgcttcacaacaaattgaatcctaagggagtaccccatccccatgtgtgtctta |
30347976 |
T |
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