View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14791_low_21 (Length: 238)
Name: NF14791_low_21
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14791_low_21 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31106364 - 31106584
Alignment:
| Q |
1 |
cgggatgctcctgcgttcataaccttgtcatcgttgcattcgcttccttgtacaccaccgtctctctatttgtgcaagttacgtaagttgaagacttgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31106364 |
cgggatgctcctgcgttcataaccttgtcatcgttgcattcgcttccttgaacaccaccgtctctctatttgtgcaagtcacgtaagttgaagacttgga |
31106463 |
T |
|
| Q |
101 |
ccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatcgtcactgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106464 |
ccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatcgtcactgt |
31106563 |
T |
|
| Q |
201 |
cacatacataagaggtgcact |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
31106564 |
cacatacataagaggtgcact |
31106584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 31094907 - 31094776
Alignment:
| Q |
61 |
tctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgat |
160 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |||||||||||| || |
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| T |
31094907 |
tctctctatttgtgctagttacttaagttgaagacttggaccatataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgcgac |
31094808 |
T |
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| Q |
161 |
agtgtttcatgtgcatctaaaaaagtatcatc |
192 |
Q |
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| T |
31094807 |
ggtgcttcatgtgcatctaaaaaagtatcatc |
31094776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 31050414 - 31050544
Alignment:
| Q |
61 |
tctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgat |
160 |
Q |
| |
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||||||||||||||| |||||| ||||||||||||||||||||||| |||||| || || ||||||||||| |||||||||| ||||||||| | |
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| T |
31050414 |
tctctctatttgtgctagttactcaagttgaagacttggaccatatagtatgatcatagttaatacataatgtatttaaaatggttttgttaa-----ac |
31050508 |
T |
|
| Q |
161 |
agtgtttcatgtgcatctaaaaaagtatcatcgtca |
196 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||| |
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| T |
31050509 |
agtgcttcatgtgcatctaaaaaaacatcatcgtca |
31050544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 31042820 - 31042939
Alignment:
| Q |
13 |
gcgttcataaccttgtcatcgttgcattcgcttccttgtacaccaccgtctctctatttgtgcaagttacgtaag---ttgaagacttggaccatataat |
109 |
Q |
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|||||| ||||||||| ||||||||| | |||||| | || |||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |
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| T |
31042820 |
gcgttcgtaaccttgtagtcgttgcatcctcttcctcgcacgccaccgtctctctatttgtgcaagttacagaagtaattaaagacttggaccatataat |
31042919 |
T |
|
| Q |
110 |
atgataatggtaaatacata |
129 |
Q |
| |
|
||||| ||| |||||||||| |
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| T |
31042920 |
atgatcatgataaatacata |
31042939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 21181654 - 21181570
Alignment:
| Q |
108 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatc |
192 |
Q |
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|
|||||||||||||||| | ||||| ||| ||||||||| |||||||||||| | ||||||||| ||||||||||||| |||||| |
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| T |
21181654 |
atatgataatggtaaacaattaatgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatc |
21181570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 21150347 - 21150284
Alignment:
| Q |
122 |
aatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag |
185 |
Q |
| |
|
|||| |||||| ||||||| ||||| |||||||||||| |||||||||||||||||||| |||| |
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|
| T |
21150347 |
aatatataatgtatttaaattgattatgttaaatgtgagagtgtttcatgtgcatctaataaag |
21150284 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 21267230 - 21267171
Alignment:
| Q |
125 |
acataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaa |
184 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||| |||||| |||||||||||||||| |
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| T |
21267230 |
acataatgcatttaaaatgattatgttgaaagtgacggtgttttatgtgcatctaaaaaa |
21267171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 21190588 - 21190542
Alignment:
| Q |
108 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaa |
154 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||||| |
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| T |
21190588 |
atataataatggcaaatacataatgtgtttaaaatgattttgttaaa |
21190542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 21200870 - 21200822
Alignment:
| Q |
108 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaatg |
156 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||||||| | ||||||| |
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| T |
21200870 |
atatgataatggtaagtacataatgtattcaaaatgattctcttaaatg |
21200822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 21314650 - 21314582
Alignment:
| Q |
117 |
tggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag |
185 |
Q |
| |
|
|||||||| |||||||||||| |||||||| |||||| || || | ||||| || ||||| |||||||| |
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| T |
21314650 |
tggtaaattcataatgcatttgaaatgattctgttaagtgggacaatgtttaatatgcatataaaaaag |
21314582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 196
Target Start/End: Complemental strand, 3628 - 3488
Alignment:
| Q |
56 |
caccgtctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaat |
155 |
Q |
| |
|
|||| |||||| |||||||| |||||| |||||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||| ||||||||||| |
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|
| T |
3628 |
caccatctctccatttgtgctagttactgaagttgaagacttggaccttataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaat |
3529 |
T |
|
| Q |
156 |
gtgatagtgtttcatgtgcatctaaaaaagtatcatcgtca |
196 |
Q |
| |
|
||| |||| ||||||||| ||||||||||||||||||||| |
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|
| T |
3528 |
gtggcagtgcttcatgtgcttctaaaaaagtatcatcgtca |
3488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 65187 - 65257
Alignment:
| Q |
115 |
aatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag |
185 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
65187 |
aatggtaaatatataatgtatttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaag |
65257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 62015 - 62062
Alignment:
| Q |
112 |
gataatggtaaatacataatgcatttaaaatgattttgttaaatgtga |
159 |
Q |
| |
|
||||||||||||| ||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
62015 |
gataatggtaaattcatcatgtatttgaaatgattttgttaaatgtga |
62062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 3441 - 3492
Alignment:
| Q |
108 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtga |
159 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
3441 |
atatgataattgtaaatacataatgtattcaaaatgattctgttaaatgtga |
3492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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