View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14791_low_3 (Length: 414)

Name: NF14791_low_3
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14791_low_3
NF14791_low_3
[»] chr7 (2 HSPs)
chr7 (1-406)||(5669573-5669978)
chr7 (1-406)||(5694625-5695030)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 5669573 - 5669978
Alignment:
Q  1 tccacaagcaaatgagtttgctggtatatctcctcagatctcggatgtgccttgtctccaacaagaaacgcatgtacctcgtcccttacctgaatccagc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5669573 tccacaagcaaatgagtttgttggtatatctcctcagatctcggatgtgccttgtctccaacaagaaacgcatgtacctcgtcccttacctgaatccagc 5669672  T
Q  101 tacatcccggctccttctttaacttataattcttcataaaacttcgtattttcgcaacctcgccccacattcctgcgatagcatatacattcgacaaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5669673 tacatcccggctccttctttaacttataattcttcataaaacttcgtattttcgcaacctcgccccacattcctgcgatagcatatacattcgacaaaag 5669772  T
Q  201 aacgtaagcagaagaatcttgagggtccaactgcaataaagaattggctgctttttctgcaacctcaacgttcccttgcaacttgcaaataccgagtaaa 300  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5669773 tacgtaagcagaagaatcttgagggtccaactgcaataaagaattagctgctttttctgcaacctcaacgttcccttgcaacctgcaaataccgagtaaa 5669872  T
Q  301 gttctccatataacatcatcagcttcaaaaggcatgctttcaataagctctaaagcttcatttacttggcctgacctaccaagtagatctaccatgcaag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5669873 gttctccatataacatcatcagcttcaaaaggcatgctttcaataagctctaaagcttcatttacttggcctgacctaccaagtagatctaccatgcaag 5669972  T
Q  401 aataat 406  Q
    ||||||    
T  5669973 aataat 5669978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 5694625 - 5695030
Alignment:
Q  1 tccacaagcaaatgagtttgctggtatatctcctcagatctcggatgtgccttgtctccaacaagaaacgcatgtacctcgtcccttacctgaatccagc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5694625 tccacaagcaaatgagtttgttggtatatctcctcagatctcggatgtgccttgtctccaacaagaaacgcatgtacctcgtcccttacctgaatccagc 5694724  T
Q  101 tacatcccggctccttctttaacttataattcttcataaaacttcgtattttcgcaacctcgccccacattcctgcgatagcatatacattcgacaaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5694725 tacatcccggctccttctttaacttataattcttcataaaacttcgtattttcgcaacctcgccccacattcctgcgatagcatatacattcgacaaaag 5694824  T
Q  201 aacgtaagcagaagaatcttgagggtccaactgcaataaagaattggctgctttttctgcaacctcaacgttcccttgcaacttgcaaataccgagtaaa 300  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5694825 tacgtaagcagaagaatcttgagggtccaactgcaataaagaattagctgctttttctgcaacctcaacgttcccttgcaacctgcaaataccgagtaaa 5694924  T
Q  301 gttctccatataacatcatcagcttcaaaaggcatgctttcaataagctctaaagcttcatttacttggcctgacctaccaagtagatctaccatgcaag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5694925 gttctccatataacatcatcagcttcaaaaggcatgctttcaataagctctaaagcttcatttacttggcctgacctaccaagtagatctaccatgcaag 5695024  T
Q  401 aataat 406  Q
    ||||||    
T  5695025 aataat 5695030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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