View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14791_low_5 (Length: 381)
Name: NF14791_low_5
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14791_low_5 |
 | |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 14737671 - 14738024
Alignment:
| Q |
9 |
ggacatcatcacctttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgtccgctgttgtcaatgcttgttgtataatctc |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
14737671 |
ggacatcaacacctttactttgaataagatatttgctaacaagatcaagttctttctcattaggatcgtccgctgttgtcaatgcttgttgtataatctc |
14737770 |
T |
|
| Q |
109 |
aagaccccttgttactatcagacacatttagggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14737771 |
aagaccccttgttactatcagacacatttagggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctct |
14737870 |
T |
|
| Q |
209 |
aacaagttttgtggcggatccaagaannnnnnnatgtaggggccataaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttac |
308 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14737871 |
aacaagttttgtggcggatccaagaatttttttatgtaggggccataaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttac |
14737970 |
T |
|
| Q |
309 |
acatatcttaaacttgaacaaatttattatctatctatagatttacacatatat |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14737971 |
acatatcttaaacttgaacaaatttattatctatctatagatttacacatatat |
14738024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 14744264 - 14744479
Alignment:
| Q |
21 |
ctttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgtccgctgttgtcaatg-cttgttgtataatctcaagaccccttg |
119 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||| |||||| ||||||||||||| ||||| | |||||| ||||||||| ||||||||| |||||| |
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|
| T |
14744264 |
ctttaccttgaataagatattcgataacaagatcaatttctttttcattgggatcgttcgctgctatcaatgttttgttgtatgatctcaagatcccttg |
14744363 |
T |
|
| Q |
120 |
ttactatcagacacattt-ag----ggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctctaacaag |
214 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||||||| |||| | |||| |||||| ||||| ||||||||| ||||| |||| ||| |||||| |
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|
| T |
14744364 |
ttactaatagacacatttgaggagaggagtaacaagagcaaaagggtgctacatcgactttttatcatttattttttcgaccatgttttcctc-aacaag |
14744462 |
T |
|
| Q |
215 |
ttttgtggcggatccaa |
231 |
Q |
| |
|
||| ||||||| |||| |
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|
| T |
14744463 |
tttaatggcggagccaa |
14744479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 19358506 - 19358570
Alignment:
| Q |
253 |
ataaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
19358506 |
ataaaaagtagtagagtgaaatgttaaagcgagaaacatgtcaatgggttggttacagatatctt |
19358570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 10487759 - 10487854
Alignment:
| Q |
62 |
ttctcattgggatcgtccgctgttgtcaatgcttgttgtataatctcaagaccccttgttactatcagacacatttagggagtaacaagagcaaaa |
157 |
Q |
| |
|
|||||||||||||| | | ||||||||||| |||||||||||| |||||| |||||||||||||| |||| | || ||||||||| ||||||| |
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|
| T |
10487759 |
ttctcattgggatcatttgatgttgtcaatgattgttgtataatatcaagatcccttgttactatcggacaactctaaggagtaacagtagcaaaa |
10487854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 19722623 - 19722682
Alignment:
| Q |
254 |
taaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacata |
313 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
19722623 |
taaaaagtagtagagtgaatttttaaattgacaaacatgtcaatgggttcgttacacata |
19722682 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 19887192 - 19887137
Alignment:
| Q |
254 |
taaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttaca |
309 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
19887192 |
taaaaagtagtagagtctaatgttaaagcgtgaaacatgtcaataggttggttaca |
19887137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 17589107 - 17588890
Alignment:
| Q |
9 |
ggacatcatcacctttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgtccgctgttgtcaatgcttgttgtataatctc |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
17589107 |
ggacatcaacacctttactttgaataagatatttgcgaacaagatcaagttctttctcattgggatcgttcgctgttgtcaatgcttgttgtataatctc |
17589008 |
T |
|
| Q |
109 |
aagaccccttgttactatcagacacatttagggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctct |
208 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17589007 |
aagaccccttgttactatcggacacatttagggagtaacaagagcaaaaaggtgttgcatcggcttttcatcaaatattttttcaaccatatttttctct |
17588908 |
T |
|
| Q |
209 |
aacaagttttgtggcgga |
226 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17588907 |
aacaagttttgtggcgga |
17588890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 255 - 362
Target Start/End: Complemental strand, 17588779 - 17588672
Alignment:
| Q |
255 |
aaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatctatctatagatttac |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17588779 |
aaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatctatctatagatttac |
17588680 |
T |
|
| Q |
355 |
acatatat |
362 |
Q |
| |
|
|||||||| |
|
|
| T |
17588679 |
acatatat |
17588672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 17583049 - 17582841
Alignment:
| Q |
28 |
ttgaataagatatttgctaacaagatcaagttctttctcattgggatcgtccgctgttgtcaatg-cttgttgtataatctcaagaccccttgttactat |
126 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
17583049 |
ttgaataagatattcgataacaagatcaatttctttttcattgggatcgttcgctgctgtcaatgttttgttgtataatctcaagatcccttgttactaa |
17582950 |
T |
|
| Q |
127 |
cagacacattt-ag----ggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctctaacaagttttgtg |
221 |
Q |
| |
|
|||||||||| || ||||||| |||||||||| || | | |||| |||||| ||||| ||||||||| ||||| |||| ||| ||||||||| || |
|
|
| T |
17582949 |
tagacacatttgaggagaggagtaataagagcaaaagggcgctacatcgactttttatcatttattttttcgaccatgttttcctc-aacaagtttaatg |
17582851 |
T |
|
| Q |
222 |
gcggatccaa |
231 |
Q |
| |
|
||||| |||| |
|
|
| T |
17582850 |
gcggagccaa |
17582841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 342
Target Start/End: Complemental strand, 32578334 - 32578246
Alignment:
| Q |
255 |
aaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatc-ttaaacttgaacaaatttattatctat |
342 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||| || ||||||||||||| |
|
|
| T |
32578334 |
aaaaagtagtagagtgaaatgttaaagctagaaacatgtcaatgggttggttacaaatatctttagacttgagcagatttattatctat |
32578246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 12734287 - 12734226
Alignment:
| Q |
254 |
taaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatc |
315 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
12734287 |
taaaaagtagtagagcgaaattttaaatcgagaaacatgtcaatgggtgggttacaaatatc |
12734226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 18913014 - 18912946
Alignment:
| Q |
272 |
aatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatct |
340 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| |||| || ||||| ||||||||||||||| |
|
|
| T |
18913014 |
aatgttaaagcgagaaacatgtcaatggtttggttacaaatatatttgacttggacaaatttattatct |
18912946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 18908417 - 18908362
Alignment:
| Q |
254 |
taaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttaca |
309 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||| || ||||||||| |
|
|
| T |
18908417 |
taaaaagtagtaaagtgaaatgttaaagcaagaaacatgtcaacggtttggttaca |
18908362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 18920256 - 18920196
Alignment:
| Q |
283 |
gagaaacatgtcaatgggttggttacacatat-cttaaacttgaacaaatttattatctat |
342 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| |||| ||||| ||||||||||| ||||| |
|
|
| T |
18920256 |
gagaatcatgtcaatgggttggttacaaatatccttagacttggacaaatttattgtctat |
18920196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 14144289 - 14144327
Alignment:
| Q |
22 |
tttactttgaataagatatttgctaacaagatcaagttc |
60 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
14144289 |
tttaccttgaataagatattcgctaacaagatcaagttc |
14144327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 8653 - 8713
Alignment:
| Q |
255 |
aaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatc |
315 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||||||| ||||||| ||||| |
|
|
| T |
8653 |
aaaaagtagtagagtgaaattttaaatcgagaaacaggtcaatgggtgggttacaaatatc |
8713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 14749963 - 14750030
Alignment:
| Q |
276 |
ttaaagtgagaaacatgtcaatgggttggttacacatatc-ttaaacttgaacaaatttattatctat |
342 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| |||| ||| |||||| |||||||||||||||| |
|
|
| T |
14749963 |
ttaaagcgagaaacatgtcaataggttggttacaactatctttagacttgagcaaatttattatctat |
14750030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 6071330 - 6071373
Alignment:
| Q |
22 |
tttactttgaataagatatttgctaacaagatcaagttctttct |
65 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
6071330 |
tttaccttgaataagatatttgctaacaagattaagttccttct |
6071373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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