View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14791_low_6 (Length: 377)
Name: NF14791_low_6
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14791_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 19661298 - 19660957
Alignment:
| Q |
17 |
tatcaagaataattcaaacagtcagatcttagtttaattggaaaacatggatggctaaagattgaagaggtggaggtggtgtattaattaactaacatcg |
116 |
Q |
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| T |
19661298 |
tatcaagaataattcaaaccgtcagatcttagtttaattggaaaacatggatggctaaagattgaagaggtgaaggtggtgtagtaattaactaacatcg |
19661199 |
T |
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| Q |
117 |
tgatctctggtggtataatttgtcgggaacactagcatttcccnnnnnnnnntcatagattggaaacacttttttcacgagaaggagtgatcattttgag |
216 |
Q |
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| T |
19661198 |
tgatctctggtggtataatttgtcgggaacactagcatttccaaaaaaaaaatcaaagatttgaaacacttttttcacgagaaggagtgatcattttgag |
19661099 |
T |
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| Q |
217 |
gataaaaagtagaaagggtgacatttggaaagagacaggaaagaaattaaggtcaatgatagttgatagacactgcccttgaaattgcaatctaagctgt |
316 |
Q |
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| T |
19661098 |
gataaaaagtagaaagggtgacgtttggaaagagacaggaaagaaattaaggtcaatgatagttgataga---ggtccttgaaattgcaatctaagctct |
19661002 |
T |
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| Q |
317 |
acaataaaagcatgtgagacaaagaaagagtaccaaggagaaagg |
361 |
Q |
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| T |
19661001 |
acaataaaagcatgtgagacagagaaagagtaccaaggagaaagg |
19660957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 33910301 - 33910163
Alignment:
| Q |
21 |
aagaataattcaaacagtcagatcttagtttaattggaaaacatggatggctaaagattgaagaggtggaggtggtgtattaattaactaacatcgtgat |
120 |
Q |
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| T |
33910301 |
aagaataattcaaaccgttagatcttggtttaattggaaaacatggatggctaaagattgaagaggtggaggtggggtattaattaactaacatcgtgat |
33910202 |
T |
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| Q |
121 |
ctctggtggtataatttgtcgggaacactagcatttccc |
159 |
Q |
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| T |
33910201 |
ctctcggggtataatttgtggggaacactagcatttccc |
33910163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 1750866 - 1750727
Alignment:
| Q |
17 |
tatcaagaataattcaaacagtcagatcttagtttaattggaaaacatggatggctaaagattgaagaggtggaggtggtgtattaattaactaacatcg |
116 |
Q |
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|||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
1750866 |
tatcaagaataatttaaacagttagatcttggcttaattggaaaacatggatggctaatgattgaagaggtggaggtggggtattaattaactaacatcg |
1750767 |
T |
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| Q |
117 |
tgatctctggtggtataatttgtcgggaacactagcattt |
156 |
Q |
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| T |
1750766 |
tgatctctcgtggtataatttttcgggaagattagcattt |
1750727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 3609075 - 3609202
Alignment:
| Q |
15 |
aatatcaagaataattcaaacagtcagatcttagtttaattggaaaacatggatggctaaagattgaagaggtggaggtggtgtattaatt----aacta |
110 |
Q |
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||||||| || ||||| |||| || ||||||| | | || |||||||||||| || | |||||||||| ||||||||| || ||||||||| ||||| |
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| T |
3609075 |
aatatcacgagtaattaaaaccgttagatcttggctcaagtggaaaacatgggtgaccaaagattgaaaaggtggaggaggggtattaattaatgaacta |
3609174 |
T |
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| Q |
111 |
acatcgtgatc-tctggtggtataattt |
137 |
Q |
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| T |
3609175 |
gcatcgtgatcttctcgtggtataattt |
3609202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 32928394 - 32928475
Alignment:
| Q |
40 |
agatcttagtttaattggaaaacatggatggctaaagattgaagaggtggaggtggtgtattaattaactaacatcgtgatct |
122 |
Q |
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||||||| | |||||||||||||||||||||| |||||| ||||||||||||| | |||||||| |||||| |||||||||| |
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| T |
32928394 |
agatcttggcttaattggaaaacatggatggccaaagatcgaagaggtggaggaagggtattaatgaactaa-atcgtgatct |
32928475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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